Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq254 107 4e-18 seq241 86.0 1e-11 >seq254 Length=118772 Score = 107 bits (118), Expect = 4e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| ||||| || |||||||| || ||||||||||| |||| | || | ||||| Sbjct 33079 GAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATC 33138 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | ||||||||||| | ||| || ||||| || Sbjct 33139 CTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATACCCTCCTTGTC 33198 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || |||||| | || | | |||| || ||| || ||||| || || || Sbjct 33199 CTGGATCTTGCTCTTGACATTGTCGATGGTGTCGGACGACTCCACCTCAAGGGTGATGGT 33258 Query 152072 TTTGCCCGT 152080 ||||| || Sbjct 33259 CTTGCCGGT 33267 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| ||||| || || ||||||||||||||||||| | || | ||||| Sbjct 32797 AGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAGAGGGTACGGCCATCC 32856 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || |||||||| || | | ||||||||||| | ||| || ||||| || Sbjct 32857 TCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGGATGCCCTCCTTATCC 32916 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| ||| ||||| | || | | || || ||| || ||||| || || || Sbjct 32917 TGAATCTTTGACTTGACGTTGTCGATCGTATCGGATGACTCAACCTCAAGGGTGATGGTC 32976 Query 152073 TTGCCCGTGA 152082 ||||| |||| Sbjct 32977 TTGCCGGTGA 32986 Score = 96.9 bits (106), Expect = 8e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || ||||||||||| || | | ||| | || ||||| | Sbjct 32574 CAAG-TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTACGGCCGTCTTCGA 32632 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || || || || | |||||| |||| | || || ||||| || |||| Sbjct 32633 GCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGAATACCCTCCTTGTCCTGAA 32692 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || || || | || | |||||||| ||| || || | || ||||| |||| Sbjct 32693 TCTTCGACTTCACGTTGTCAATCGTGTCTGAAGACTCAACCTCCAATGTGATAGTCTTGC 32752 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | ||||| ||||| ||||||| |||||| Sbjct 32753 CAGTGAGTGTCTTGACGAAGATCTGCAT 32780 >seq241 Length=242151 Score = 86.0 bits (94), Expect = 1e-11 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| | || || || ||||| || ||||||||||| |||| | ||| | Sbjct 46855 GAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCG 46796 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || ||||||||||| | | ||||||||||| | || || || Sbjct 46795 GCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGGAATGCCCTC 46736 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || |||||| | || | | |||| || ||| || || || || Sbjct 46735 CTTGTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGACTCCACCTCGAGGGT 46676 Query 152066 AATAGTTTTGCCCGTGA 152082 || || ||||| |||| Sbjct 46675 GATCGTCTTGCCGGTGA 46659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153812284802496