Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq254 149 2e-30 seq241 143 6e-29 seq275 87.8 4e-12 >seq254 Length=118772 Score = 149 bits (164), Expect = 2e-30 Identities = 145/187 (78%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || || || || ||||| |||||||| Sbjct 32986 TCACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCCGATACGATCGACAACGTCAAGT 32927 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||||||||| || || || ||||||||||||||||| || | || |||||||| | Sbjct 32926 CAAAGATTCAGGATAAGGAGGGCATCCCTCCGGACCAGCAGCGCTTGATTTTCGCCGGCA 32867 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| ||||| | || || ||||||| ||| ||||||| ||||| || || | Sbjct 32866 AGCAGCTCGAGGATGGCCGTACCCTCTCCGATTACAACATCCAAAAGGAATCCACTCTAC 32807 Query 178123 ATCTTGT 178129 |||| || Sbjct 32806 ATCTCGT 32800 Score = 145 bits (160), Expect = 2e-29 Identities = 143/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || |||||||| |||||||| || ||||||||||| || ||||| Sbjct 33267 ACCGGCAAGACCATCACCCTTGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGAGC 33208 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| || || ||||||||||||||||| || || ||||||||||| || Sbjct 33207 AAGATCCAGGACAAGGAGGGTATCCCTCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 33148 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || |||| || ||| |||| || || || ||||| ||| Sbjct 33147 CAGCTTGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCTACACTCCAT 33088 Query 178125 CTTGT 178129 || || Sbjct 33087 CTCGT 33083 Score = 118 bits (130), Expect = 3e-21 Identities = 150/205 (73%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || ||||| || || || ||||| | ||||| || |||||| Sbjct 32777 CAGATCTTCGTCAAGACACTCACTGGCAAGACTATCACATTGGAGGTTGAGTCTTCAGAC 32718 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || |||||||||||||| || || || || ||||| ||||| Sbjct 32717 ACGATTGACAACGTGAAGTCGAAGATTCAGGACAAGGAGGGTATTCCCCCGGATCAGCAG 32658 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| || || || || || ||||||||||| || | ||||| | || || ||| || Sbjct 32657 CGACTCATTTTTGCTGGCAAGCAGCTCGAAGACGGCCGTACTCTCTCAGACTACAACATC 32598 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 32597 CAGAAGGAGTCCACTCTCCA-CTTG 32574 >seq241 Length=242151 Score = 143 bits (158), Expect = 6e-29 Identities = 144/186 (77%), Gaps = 1/186 (1%) Strand=Plus/Plus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || |||||||||||||||||||| || ||||||||||| || ||||| Sbjct 46659 TCACCGGCAAGACGATCACCCTCGAGGTGGAGTCGTCCGACACCATCGACAATGTCAAGT 46718 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || || ||||||||||| || | ||||||||||| | Sbjct 46719 CCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCTTGATCTTCGCCGGCA 46778 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| || || | ||||| |||| || ||| |||| || || ||||| || | Sbjct 46779 AGCAGCTCGAGGACGGCCGCACTCTGTCCGACTACAACATCCAGAAGGAGTCAACGCTCC 46838 Query 178123 ATCTTG 178128 | |||| Sbjct 46839 A-CTTG 46843 >seq275 Length=365033 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || || || ||||||||||| || || ||||||||||| || |||||||| Sbjct 273731 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 273790 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 ||||| | || || |||| || ||| |||| || || || || ||||| |||| Sbjct 273791 GATGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTGCA-CTTG 273844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203722316463744