Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paraphoma_20sp._20B47-9_20[genbank_20GCA_5F001748405.1_202016-08-29] 576 sequences; 38,548,368 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq241 145 7e-30 seq254 138 1e-27 seq275 129 5e-25 >seq241 Length=242151 Score = 145 bits (160), Expect = 7e-30 Identities = 157/206 (76%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || ||||| ||||||||| ||||| |||||||| Sbjct 46864 GCCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGA 46805 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| |||||||||||||||||||| |||| |||||| ||||||| ||| Sbjct 46804 CAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCCGGGGG 46745 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 || || |||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 46744 AATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG--ATGGTGTCGGACGACTCC 46687 Query 41813 ACCTCCACCGTTATCGTTTTACCCGT 41838 ||||| | || ||||| || || || Sbjct 46686 ACCTCGAGGGTGATCGTCTTGCCGGT 46661 >seq254 Length=118772 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| || || ||| ||||||||| ||||| ||||| ||| Sbjct 32554 CCACCACGCAGACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAG 32613 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| |||||||||||||| || || || || ||||| || |||| |||| Sbjct 32614 AGAGTACGGCCGTCTTCGAGCTGCTTGCCAGCAAAAATGAGTCGCTGCTGATCCGGGGGA 32673 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 | | |||||||||| ||| | || | |||| ||| | | | ||||| ||||| | Sbjct 32674 ATACCCTCCTTGTCC-TGAATCTTCGACTTC-ACGTTGTCAATCGTGTCTGAAGACTCAA 32731 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || || ||||| ||||| |||||||| Sbjct 32732 CCTCCAATGTGATAGTCTTGCCAGTGAGTGTCTTGACGAAGATCTGCAT 32780 Score = 131 bits (144), Expect = 2e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | || ||||| || || ||||||||| ||||| |||||||| Sbjct 33064 GCCTCCACGAAGGCGGAGGACGAGATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCGGA 33123 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||||||||| ||||||||||| ||||||| || Sbjct 33124 GAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGG 33183 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | | |||||||||| ||| || ||| || | || | |||||| ||||||| Sbjct 33184 GATACCCTCCTTGTCCTGGATCTTGCTCTTGACATTGTCG--ATGGTGTCGGACGACTCC 33241 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCA 41840 ||||| | || || || || || |||| Sbjct 33242 ACCTCAAGGGTGATGGTCTTGCCGGTCA 33269 Score = 107 bits (118), Expect = 2e-18 Identities = 112/146 (77%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| ||||| || ||||| || |||||| Sbjct 32782 CCTCCACGAAGGCGCAGGACGAGATGTAGAGTGGATTCCTTTTGGATGTTGTAATCGGAG 32841 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || |||||||||||||||||||| |||| |||||| ||||||| || Sbjct 32842 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAAATCAAGCGCTGCTGGTCCGGAGGG 32901 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG 41781 | || |||||| ||| ||| | |||| Sbjct 32902 ATGCCCTCCTTATCC-TGAATCTTTG 32926 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | ||||| ||||| || |||||||||||| || |||||| | Sbjct 32326 CCACCACGCAGGCGGAGCACCAAGTGCAGTGTCGACTCCTTCTGAATATTGTAGTCGCTG 32385 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| || | |||||| || ||||| || || ||||| ||||| | || Sbjct 32386 AGCGTTCGGCCGTCTTCCAACTGCTTACCAGCGAAGATGAGACGCTGCTGGTCAGGCGGG 32445 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | || | || | || ||| | | | || |||||||| || || Sbjct 32446 ATACCCTCCTTGT-CTTGGATCTTCGATTTCACGTTGTCGATGGTATCGCTCGATTCGAC 32504 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || || || ||||| || || || ||||| Sbjct 32505 TTCCAATGTGATAGTCTTGCCAGTAAGAGTCTTGACAAAGATTTGCAT 32552 >seq275 Length=365033 Score = 129 bits (142), Expect = 5e-25 Identities = 109/134 (81%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||||||||| ||||| ||||||||| Sbjct 273864 CCTCCACGCAGACGGAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 273805 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || |||||||||||||||||||| || || ||||| ||||||| |||| Sbjct 273804 AGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 273745 Query 41756 ACGCTCTCCTTGTC 41769 | || ||||||||| Sbjct 273744 ATGCCCTCCTTGTC 273731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462300671411200