Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peltaster_20fructicola_20[genbank_20GCA_5F001592805.1_202016-03-15] 14 sequences; 19,024,943 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq11 179 5e-40 seq12 116 5e-21 >seq11 Length=3629084 Score = 179 bits (198), Expect = 5e-40 Identities = 568/870 (65%), Gaps = 14/870 (2%) Strand=Plus/Minus Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033 || || || ||||| |||||||| | | |||||| || | | || || ||||| Sbjct 2143000 CCGGGGCACTCATTTGGACACATGAGAGTCCACTCGCCGTTGGACTCGACACGCTTCATG 2142941 Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093 |||||||| || ||||| || || || ||||| | | | | ||| || || || Sbjct 2142940 AAGAGATCTGGTATCCAGAGGGCGTAGAAGAGATCGCGAGCGCGAACCTCTTCCTTGCCG 2142881 Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153 |||||| || |||||||| || | | ||| | ||||| || |||||||| ||| Sbjct 2142880 TGATTCTTGCGGAGGTCGAGGAAGGCAAACACATCGGCGTGCCATGGCTCCAAGTAGATG 2142821 Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213 || | | || || |||||||| || ||||| || | ||||| |||||||| || | Sbjct 2142820 GCGAATGCACCTGGTCGTTTGTTGCCGCCCTGGTCAACGTATCGGGCGGTGTTGTTGAAC 2142761 Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273 |||| || ||| || | | ||| ||||| | || ||||| || ||| || ||| Sbjct 2142760 ACTCGCAGCATAGGGACGAGACCGTTGGACGTGCCGTTGGTGCCACTGATGTATGAACCA 2142701 Query 72274 CTGGCACGAAT---AT-TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 72329 || |||||||| || ||| |||| |||| | || || || |||| ||||| | Sbjct 2142700 CTAGCACGAATGCGATGTGCG--TTGA--GACCGACGCCACCAGCATTTTTTGAGATCAT 2142645 Query 72330 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAG 72389 ||||| || | ||| || ||||||||||| || || || ||| |||||| | || Sbjct 2142644 AGCGCAAGTCTTGAGCGTGTCGTAGATGCCCTCAATGCTGTCCTCCTTCATGTCGACAAG 2142585 Query 72390 AAAACA-GCT-AGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCG 72447 || || | | || | || | | || || || ||| | || || || ||| Sbjct 2142584 GAAGCATGATGCGAGCTGTGCT--TGTGGTGTGCCAGCGGCAAAGAGCGTTGGCGAGGCG 2142527 Query 72448 TGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCAT 72507 || || || | || | |||| || ||||| || || || || | || || ||| | Sbjct 2142526 TGTGTGAAGTACTTGTTGGACATGAGGTTGTAAGTTTCGATGGCAGCCTCAATGTCCTCT 2142467 Query 72508 TGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTA 72567 |||||| || || || |||||||| | ||| ||||| |||| ||| | |||||| Sbjct 2142466 CCATGTATACCGACAGCCACACGCATAATCATGTGCTGTGGTCGTTCTGCAATCTTGCCG 2142407 Query 72568 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 72627 | || ||| | ||| ||| |||| ||| || |||||||| || | ||| ||| Sbjct 2142406 CTGATGCGCAAGAGGTATGATCGCTCCAGAGTCTTGAAACCAAAGTACTGGTAGTTGAAG 2142347 Query 72628 TCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTAT-ATCCAT 72686 ||||| ||||| | || | || || || | |||| || || | ||| | | || Sbjct 2142346 TCTCGGTCGTACACGATGGCAGAGTTCAGCTCATCCGCATGCTTCATCACTGTCTTGTAT 2142287 Query 72687 GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAA 72746 | || | ||| || || || | |||| | || || |||| |||| | | | Sbjct 2142286 GTTGCCTC-TGAGATCATGGGTGCCCATTTCTTCGTCTTTGGGTTAATGTAGTCGTACAG 2142228 Query 72747 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 72806 ||| | | ||| | || | || ||||| | |||||| || || || || || || Sbjct 2142227 ATCTTGGACGACTGCTGAGAACTGCTTCTTTGTCTGCTTGTGGAGGTTGGAGACAGCGAT 2142168 Query 72807 TCTGGCGGCTAGAATGGCATAATCTGGATG 72836 |||||| || || || ||||| || || || Sbjct 2142167 TCTGGCAGCGAGGATTGCATAGTCAGGGTG 2142138 >seq12 Length=4887340 Score = 116 bits (128), Expect = 5e-21 Identities = 366/561 (65%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| || ||||| ||||||||| | | || | |||||||| || ||||| Sbjct 3658579 ACAAGCGAAGTCAGTGTGCATACCCTCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAG 3658520 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAA 42183 || ||||| ||||||||||| || |||||||| || | || || ||||| || ||||| Sbjct 3658519 CCCTGGCATGAGGCCACGCTTCTTCAGCCAAAAGATTGCAGCGAAGGATCCCGAGAAGAA 3658460 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CACTGTCATG 42240 ||| || || || || || ||||| || |||| | | || |||| Sbjct 3658459 GATACCCTCGACGGCGGCGAAGGCGATGAGTCGGCAGGCGAAGGTGGAGTTTTTGTCGCT 3658400 Query 42241 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 42300 ||||| ||||||| || |||||||| | || || || | || ||||| || Sbjct 3658399 GATCCATCGAAGAGCCCAGTCAGCCTTCTTACGGATGCATGGAATGTTGTCGATGGCGTT 3658340 Query 42301 AAAGAGATAGtt--tttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATAC 42358 || || ||| | | || | | || | | ||||| ||||| | ||| || Sbjct 3658339 GAACAGGTAGGTACGCTGTCGTGGC--TCGCTGATGTATGTGTCGATGAGGAGAGAGTAT 3658282 Query 42359 ATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTA 42418 | || || || ||||| || || ||||| || |||||||| |||| ||||| | Sbjct 3658281 GTCTCAGAGTGGATGTTCTCCATCATAATCTGGAAGCCGTAGAAGCATCGAGCCTCTGGG 3658222 Query 42419 ACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCT 42478 | ||| || || || |||||||| | | || ||||| || ||||||||| || Sbjct 3658221 ATCTGGACCTCACCACTGAATCGTTCGACGAGGTTCTCGTTGACGATTCCGTCAGATGCA 3658162 Query 42479 GCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTT-AAT---TTATT 42534 ||||| || || | || || | || | || | || ||| ||| || || Sbjct 3658161 GCAAAGAATGCAAGCACGTGAGAGACGAAGAAGCGCTCAT-CGTCGTTCAATCGCTTGTT 3658103 Query 42535 CCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGC 42594 ||| || | | || || || | || | ||| || ||||||| ||||| || || || Sbjct 3658102 CCAGTCGTGAAGGTCCTTTGACAGGTCAATTTCCTCAGCCGTCCAGAATGACGCCTCGGC 3658043 Query 42595 CTTTTTATACATATTCCAGAT 42615 ||| || ||||| | |||||| Sbjct 3658042 CTTCTTGTACATCTGCCAGAT 3658022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671139082550640