Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peltaster_20fructicola_20[genbank_20GCA_5F001592805.1_202016-03-15]
14 sequences; 19,024,943 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq13 105 2e-17
seq6 105 2e-17
seq12 100 7e-16
>seq13
Length=2085791
Score = 105 bits (116), Expect = 2e-17
Identities = 140/192 (73%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 104369 TCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAA 104428
|| |||||||| || |||||||| | || | ||||| || || || |||||||| ||
Sbjct 973818 TCCTTCTGAATGTTGTAGTCAGACAACGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 973759
Query 104429 ATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT-ACATT 104487
|| || | ||| ||||| || || || || || || || |||||||| ||| || |||||
Sbjct 973758 ATGAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGAATCTT-GCTCTTCACATT 973700
Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547
|| | || || | || || |||| |||||||||||| ||||| || || || ||
Sbjct 973699 GTCGATTGTGTCCGATGACTCGACTTCTAATGTAATAGTCTTGCCAGTGAGAGTCTTGAC 973640
Query 104548 AAATATCTGCAT 104559
|| || |||||
Sbjct 973639 GAAGATTTGCAT 973628
Score = 100 bits (110), Expect = 7e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || | ||| || ||||| | || || || |||||||| || |||||
Sbjct 973629 ATACCACCTCGCAGACGAAGAACGAGATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCG 973570
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || || || || || || ||||| || || | | ||| || || ||
Sbjct 973569 GACAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCTGGT 973510
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| || || || || ||||||||||| | || || || || | || || | ||
Sbjct 973509 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTGTCGATAGTGTCAGAGGACTCA 973450
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| ||||| || || || ||||| || |||||
Sbjct 973449 ACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 973400
>seq6
Length=1630888
Score = 105 bits (116), Expect = 2e-17
Identities = 158/222 (71%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || |||| || || || || ||||| | ||| || || ||||| || || |||||
Sbjct 190440 ATACCACCTCGAAGTCTGAGCACAAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCT 190499
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| || || | || || || || || ||||| ||||| || || | || || || ||
Sbjct 190500 GAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGT 190559
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTATCGCTAGGTTC 104508
|| || || ||||||||||||||| ||||| || ||||| || | |||||| | ||
Sbjct 190560 GGAATGCCCTCTTTATCCTGAATC-TTGCTCTTCACATTGTCGATAGTATCGGAGGACTC 190618
Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550
||||| || || || ||||| || || || || || || ||
Sbjct 190619 AACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACGAA 190660
>seq12
Length=4887340
Score = 100 bits (110), Expect = 7e-16
Identities = 126/173 (73%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || ||||| || || ||||| || ||||| | |||||| || || || |||||
Sbjct 1403612 GTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCAAGCTGCTTTCCG 1403671
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || || || ||||| || || || || |||||||||| ||
Sbjct 1403672 GCGAAGATCAGACGCTGCTGGTCTGGTGGTATGCCCTCCTTGTCTTGAATCTTTGACTTG 1403731
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535
||||| || | || || || || ||||| || || ||||||||||| ||
Sbjct 1403732 ACATTGTCGATTGTGTCTGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGT 1403784
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200
|| || ||||| || || ||||| ||||| ||||| || || || || ||||||||| ||
Sbjct 3658436 GCCTTCGCCGCCGTCGAGGGTATCTTCTTCTCGGGATCCTTCGCTGCAATCTTTTGGCTG 3658495
Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260
||||| | ||||| |||||||| | || ||||| ||||| | || | || ||
Sbjct 3658496 AAGAAGCGTGGCCTCATGCCAGGGCTCACCTTCTCCAACGAGCTCATCTCTCGTGATGAG 3658555
Query 269261 GGTTTACACTGCGACTTCGCTTGT 269284
||| | ||| ||||||||||||
Sbjct 3658556 GGTATGCACACTGACTTCGCTTGT 3658579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151398193467912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |