Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peltaster_20fructicola_20[genbank_20GCA_5F001592805.1_202016-03-15] 14 sequences; 19,024,943 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq12 138 2e-27 seq11 102 1e-16 >seq12 Length=4887340 Score = 138 bits (152), Expect = 2e-27 Identities = 344/520 (66%), Gaps = 7/520 (1%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||| |||||||| | | || || |||||||| |||||||||| Sbjct 3658849 CTTCTCGAAGAAGTTCGTCTTGCCAGCAAGCGAGATGTTCTCCATGAAGTCGAATGGGTT 3658790 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 ||| ||| ||| | || || || || || | ||| || || ||||| Sbjct 3658789 GACAGCGTTGTAGTACTTGGTGTTGCCAAGGGCGAGCAACAGGCGGTCAGCAACGAATTC 3658730 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA--GCCTAACGGGGAGCGCTTCC 159826 |||||| ||||| ||| | |||| || || |||| || || ||||| || ||| Sbjct 3658729 GATGTATTGGCACATGAGCTTAGAGTTCATGCCGAGCAATGCACAA--GGGAGAGCATCC 3658672 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 | ||| ||||| | ||| || ||| || ||||| | || | ||| | || | Sbjct 3658671 GTCAGGAACTCTTGCTCGATTGTGACTGCCTCGGTGATGATGCTCTGGACGAGCTCCTTG 3658612 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 | |||||| | | ||| || || || || || ||||| ||||| ||| Sbjct 3658611 CTTGGCTTGTTCTTCAGGTGAGAG---AAGAGAAGACAAGCGAAGTCAGTGTGCATACCC 3658555 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 || || |||||||||| ||||||||| | | |||| || ||||||| |||||| || Sbjct 3658554 TCATCACGAGAGATGAGCTCGTTGGAGAAGGTGAGCCCTGGCATGAGGCCACGCTTCTTC 3658495 Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||||||| || || || || | || || ||||| ||||| ||||| || || || Sbjct 3658494 AGCCAAAAGATTGCAGCGAAGGATCCCGAGAAGAAGATACCCTCGACGGCGGCGAAGGCG 3658435 Query 160067 ACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCC 160126 | ||| | | || | || ||| |||| | |||| | ||||| |||||| Sbjct 3658434 ATGAGTCGGCAGGCGAAGGTGGAGTTTTTGTCGCTGATCCATCGAAGAGCCCAGTCAGCC 3658375 Query 160127 TTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACA 160166 ||||| |||||| || ||| |||| |||||| |||| Sbjct 3658374 TTCTTACGGATGCATGGAATGTTGTCGATGGCGTTGAACA 3658335 >seq11 Length=3629084 Score = 102 bits (112), Expect = 1e-16 Identities = 337/507 (66%), Gaps = 14/507 (3%) Strand=Plus/Minus Query 203833 CTTCGTCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCC-TGCTTCTCAGATAG 203890 |||| ||||| || || |||||||| || | || ||| | |||| | ||| || ||| Sbjct 2144198 CTTC-TCTTGGTCGACAGTGAACTGGATTG-GTGCACTGGCGGCCATTGTTCGAAGGTAG 2144141 Query 203891 TACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTC 203950 |||||||| ||||| || || || ||| || | |||||| || | | |||| | Sbjct 2144140 TACATGCCAGTCTTGAGACCGAGCTTCCAACCAGTGAAGTGCATAGATGTTATCTTGCCC 2144081 Query 203951 ACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CG 204009 | | || || |||||| ||||||||| || || ||||| |||||| ||||| || Sbjct 2144080 ATAGTTGGCTCCTTCATGTGGATGTTCAGACTTTGACTCTGGTCAATGAAA-GCGCCTCG 2144022 Query 204010 ATCTGCGGCCATATTGATAA-TGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGT 204068 ||| || ||||| | | || | ||| | || ||||||||||| ||||||||| | | Sbjct 2144021 ATCAGCAGCCATCTGCACAATTTGTCGT-TGAGAAATCTCCCAGACCGTCTTGTATAGTG 2143963 Query 204069 CTCTGGTGTGTTGAGGCACATCTTCCCACGTC-CTGATC-GAGCCGTTGTCGGCCATCAG 204126 || | || | ||| || ||| | || |||| | || ||| |||||| || | Sbjct 2143962 CTTTCAGGTCGTCAGG--GATATTCGGAATTCGCTGAACAGAACCGCCGTCGGCGATGAT 2143905 Query 204127 TCTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATC-AGCTCCCGCACCAGGTGGG 204185 | || || | | || | ||| | | ||| | | | || ||| | ||| | Sbjct 2143904 GCGGTTCTTCATGTTGTCGCTCCA-AAGACCACGGTCAACGAGGTCCTTGAGCAGCCATG 2143846 Query 204186 GGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATG 204245 |||||| | || || || || | || ||| | || | | | |||| ||| ||| Sbjct 2143845 GGTTGACAACTTGGAATTCACCAGCCAACACACGCCGAGAATAAATGTTGGAAGTGTATG 2143786 Query 204246 GTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCA 204305 | ||||| ||||||| ||| | |||||| ||| ||| || ||||| || |||| Sbjct 2143785 GCTCGAAGCACTCGTTGAAGCCCATGATCTGACTGGTCGAGGCAGTTGGCATTGGTGCCA 2143726 Query 204306 GGAGCAGGGAGTTGCGCACACCGTATT 204332 |||||| ||||| || ||||||| || Sbjct 2143725 TGAGCAGAGAGTTTCGTACACCGTGTT 2143699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795155060847840