Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Peltaster_20fructicola_20[genbank_20GCA_5F001592805.1_202016-03-15]
14 sequences; 19,024,943 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq13 138 1e-27
seq12 105 8e-18
seq6 95.1 1e-14
>seq13
Length=2085791
Score = 138 bits (152), Expect = 1e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| |||| | ||| | || ||||||| || |||||| || || |||||||||||
Sbjct 973626 CCACCTCGCAGACGAAGAACGAGATGCAGAGTGGACTCCTTCTGAATGTTGTAGTCGGAC 973567
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
||||| || | || || |||||||| || ||||| ||||| ||||||||||| | ||
Sbjct 973566 AGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCTGGTGGA 973507
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545
| || |||||||||| |||||| ||||| ||| | | | ||||| || || ||
Sbjct 973506 ATGCCCTCCTTGTCCTGAATCTTCGACTTGA-CGTTGTCGATAGTGTCAGAGGACTCAAC 973448
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | |||||||| ||||| ||||| || || ||||||||||||||
Sbjct 973447 CTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACAAAGATTTGCAT 973400
Score = 100 bits (110), Expect = 3e-16
Identities = 162/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420
|||| ||| || | | ||| | ||||| ||||| || |||||||| || || ||||||
Sbjct 973860 TATTGGCCACCACGAAGACGAAGCACCAAGTGCAAGGTGCTCTCCTTCTGAATGTTGTAG 973801
Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480
|| || | || || |||| ||||||||||| || ||||| || | |||||||| ||
Sbjct 973800 TCAGACAACGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCT 973741
Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540
| || | | ||||||||| ||||| |||| | | | | ||||| ||
Sbjct 973740 GGTGGAATACCCTCCTTGTCTTGAATCTTGCTCTTCACATTGTCGATTGTGTCCGATGAC 973681
Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || || | || || || ||||| || || || || || |||||||||||
Sbjct 973680 TCGACTTCTAATGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 973628
Score = 91.5 bits (100), Expect = 2e-13
Identities = 123/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || || ||||| || || || ||||| | || || ||||||||||| || ||
Sbjct 973363 CTCCTTCTGAATGTTGTAATCCGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCTGCAAA 973304
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||||||||||||||| | || | || ||||||||| |||||| ||||| |||
Sbjct 973303 GATCAAGCGCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTTGACTTGA-CGT 973245
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | | || || || || || || | |||||||| ||||| ||
Sbjct 973244 TGTCGATGGTATCTGAGGACTCGACCTCAAGGGTGATGGTCTTGCCAGT 973196
>seq12
Length=4887340
Score = 105 bits (116), Expect = 8e-18
Identities = 124/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| |||||||| |||| || |||||||| ||||||||
Sbjct 1403617 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCAAGCTGCTTTCCGGCGAA 1403676
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | || ||||||||| ||||| ||||| |
Sbjct 1403677 GATCAGACGCTGCTGGTCTGGTGGTATGCCCTCCTTGTCTTGAATCTTTGACTTGACATT 1403736
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGT 46569
| | ||||| || ||||| || | ||||| || || |||||
Sbjct 1403737 GTCGATTGTGTCTGAAGACTCCACCTCGAGGGTGATAGTCTTACCCGT 1403784
>seq6
Length=1630888
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
||| ||||| | ||| |||||| ||||| |||||||| || || ||||| | || ||
Sbjct 190460 CACAAGATGAAGTGTCGACTCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCCTC 190519
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||| ||||| || || | || |||||||| | || | || ||| || |||
Sbjct 190520 GAGCTGCTTTCCGGCAAAGATAAGACGTTGCTGGTCTGGTGGAATGCCCTCTTTATCCTG 190579
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
||||| |||| | | | | || ||| || || || || | |||||||| ||
Sbjct 190580 AATCTTGCTCTTCACATTGTCGATAGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTT 190639
Query 46564 GCCCGTCAGCGTTTTAACAAAG 46585
|||||| || || || || |||
Sbjct 190640 GCCCGTGAGGGTCTTCACGAAG 190661
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238301083280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |