Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peltaster_20fructicola_20[genbank_20GCA_5F001592805.1_202016-03-15] 14 sequences; 19,024,943 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq13 116 2e-21 seq6 102 5e-17 seq12 82.4 5e-11 >seq13 Length=2085791 Score = 116 bits (128), Expect = 2e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||| || || | || |||| || ||||| || || || || Sbjct 973590 TCCTTCTGAATGTTGTAGTCGGACAGAGTACGGCCATCCTCAAGCTGCTTACCAGCGAAG 973531 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| ||||||||| | || | ||||||||||| ||||||| |||||| Sbjct 973530 ATCAATCGCTGCTGGTCTGGTGGAATGCCCTCCTTGTCCTGAATCTTCGACTTGACGTTG 973471 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || |||||| || | ||| ||||| || || || |||||||| ||| Sbjct 973470 TCGATAGTGTCAGAGGACTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACA 973411 Query 34971 AAGATCTGCATA 34982 ||||| |||||| Sbjct 973410 AAGATTTGCATA 973399 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||||| || ||||||||||| ||||| || | | || | || || Sbjct 973836 ACCAAGTGCAAGGTGCTCTCCTTCTGAATGTTGTAGTCAGACAACGTACGGCCGTCCTCG 973777 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || || || ||||| ||| | || | ||||||||||| | Sbjct 973776 AGCTGCTTTCCAGCGAAGATGAGACGCTGCTGATCTGGTGGAATACCCTCCTTGTCTTGA 973717 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| || || || | ||||| | ||| | ||| || || | || || || Sbjct 973716 ATCTTGCTCTTCAC--AT--TGTCGATTGTGTCCGATGACTCGACTTCTAATGTAATAGT 973661 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||||||||| || ||||| |||||| Sbjct 973660 CTTGCCAGTGAGAGTCTTGACGAAGATTTGCATA 973627 >seq6 Length=1630888 Score = 102 bits (112), Expect = 5e-17 Identities = 136/187 (73%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| || ||||| ||||||||||| Sbjct 190479 TCCTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAG 190538 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || |||||||||||| | || | ||||| || || |||||| || || || Sbjct 190539 ATAAGACGTTGCTGGTCTGGTGGAATGCCCTCTTTATCCTGAATCTTGCTCTTCAC--AT 190596 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| || || |||||| |||| ||| ||||| || |||||||| ||||| Sbjct 190597 --TGTCGATAGTATCGGAGGACTCAACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTT 190654 Query 34967 CACAAAG 34973 ||| ||| Sbjct 190655 CACGAAG 190661 >seq12 Length=4887340 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| || ||||| ||||| ||||| ||||| | || | || || Sbjct 1403600 ACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTGCGACCGTCCTCA 1403659 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || ||||||||| | || | ||||||||||| | Sbjct 1403660 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGTGGTATGCCCTCCTTGTCTTGA 1403719 Query 34893 ATCTT 34897 ||||| Sbjct 1403720 ATCTT 1403724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633544609392