Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Peltaster_20fructicola_20[genbank_20GCA_5F001592805.1_202016-03-15] 14 sequences; 19,024,943 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq11 100 8e-16 seq12 87.8 5e-12 >seq11 Length=3629084 Score = 100 bits (110), Expect = 8e-16 Identities = 388/598 (65%), Gaps = 34/598 (6%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATG-CGTCATATAGCCG 251465 ||||| ||||| | | || | || |||| | |||| || | || | ||| || || Sbjct 792581 ATAAGTCCACAGATCTCGCAGATGTGTACGCGGAAAGCGTC-GCTGACATCAAGAAGTCG 792523 Query 251466 ACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525 ||||| |||| ||||||||||| | |||||| |||||||| ||||| || ||||| Sbjct 792522 CTCCTTGAGGAAGGCTGATGCACCGTGAGCAATCATGCAATCACGTTCCATCTCTCCGAA 792463 Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585 ||| || |||||||| || || | ||| || ||||||||||||| || | || ||| Sbjct 792462 ACGCAGTCCACCATCTCGTGCACGACCTTCCACAGGCTGACGAGTCAGGATCTGCAGAGG 792403 Query 251586 ACCGATGGAGCGGCTATGTTG--CTTATCATTTACCATATGCTTGAGACGCTGGTAGAAT 251643 || ||||| | || | ||| || | ||||| || ||||| || ||| | Sbjct 792402 GCC--ACGAGCGCGTGCGTGGATCTTGTCGTCCACCATGTGGCGCAGACGTTGATAGTAG 792345 Query 251644 GCGGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACAT 251699 | ||||| | ||| | |||| || | || |||||| | |||| ||||| Sbjct 792344 GTCGGACCAAGGAACACCTGAGCTCTGAG----CTTCTTTCCAGTATGTCCGTTGTACAT 792289 Query 251700 AACTTCGTTTCCATTAGATTCATAACCAAGTTTCTGT-----AGCTCTGAAGCAATATCA 251754 |||||| ||| || ||| ||||| || | | | ||| ||| Sbjct 792288 GACTTCGAAGCCACGTTGTT-----GGAAGCCTCTGTCGATGAGATGTCTCGAAATGTCA 792234 Query 251755 CCAATCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCAT--TTGAATCAACA 251812 | ||| || | || ||| ||||||| | ||||| | ||| | || Sbjct 792233 GTGACGGTGAGGTTAGTGAATGGTGTGGCGTCTCCCTCGAGACCGTTCAATGATGCGAC- 792175 Query 251813 CTTTGCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGG 251872 ||||| | || | ||| ||| || || || |||||||| ||||| || || | Sbjct 792174 CTTTGAC-AACAAACACTCAATCAAATGAGCAATTGTCATACGCGACGGAATGGCGTGAG 792116 Query 251873 GATTGATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCT--C 251930 | ||||||||||| || ||| | | ||||| |||| ||| ||||| || ||||| | Sbjct 792115 GGTTGATGATGATATCTGGTGTGATACCATCTGCAGAGAACGGCATGTC---TTCCTGGC 792059 Query 251931 AATA-ATGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 ||| || | ||||| || || || || || || ||||| |||||| |||||||| Sbjct 792058 GATAGGTGATACCAATCGTACCTTTCTGACCATGTCGAGAGGCGAACTTGTCACCAAT 792001 Score = 84.2 bits (92), Expect = 6e-11 Identities = 111/154 (72%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||||||| || || || || || ||| ||| | | ||| || || | ||||| Sbjct 2143275 CAATAGATGCAAGGTTGCAGACAGCAACCTCATCGGGTGCGCAATACTCGATGATCTCGG 2143216 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 ||||| ||| || || ||| ||||| | ||||||||||| || | |||||||| Sbjct 2143215 TGCACAAGTTGGAGCTGCGGATAGTGCCAAGGTTCTTCTGGTTGCTCTTGCGGTTACAAG 2143156 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTC 155740 |||||||||| || ||||||||||| || ||||| Sbjct 2143155 CATCCTTGTAGAGCATGTATGGGGTGCCAGTCTC 2143122 >seq12 Length=4887340 Score = 87.8 bits (96), Expect = 5e-12 Identities = 142/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 289027 TTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGG---AGAATTTTGTCTCGCA 289083 || |||| |||||| || ||||||||||| || | || || ||| || || || Sbjct 2499114 TTTCCAATAGCATCGATCTCGTCAATGAAGATGATGCAGGGTGTAGACTTGCGT---GCG 2499170 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 ||||||| | || | ||| || |||| |||| ||||||| |||| || || || ||| Sbjct 2499171 TTTGCAAACAGATCCCGTACTCGCGATGGACCAACACCAACAAACATCTCAACGAACTCA 2499230 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| | || ||| | ||| | ||| | || |||||| ||| | || || || Sbjct 2499231 GAACCAGACACTGAGAAGAACGGAACACCCGACTCTCCTGCTGTTGCTTTGGCGAGCAGA 2499290 Query 289204 GTCTTACCTGTTCCAGGTGGTCC 289226 |||||||| ||||||||||| || Sbjct 2499291 GTCTTACCAGTTCCAGGTGGACC 2499313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817335992718