Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq56 136 5e-27 seq61 120 4e-22 >seq56 Length=3289960 Score = 136 bits (150), Expect = 5e-27 Identities = 372/565 (66%), Gaps = 10/565 (2%) Strand=Plus/Minus Query 62747 GCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 62806 |||| ||| |||| || ||||| || ||||||| || | | || | || |||||| Sbjct 1940643 GCAAGAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGAGCACTGTACTCGATGATCTCA 1940584 Query 62807 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 62866 ||||| || || | || ||||| | || | || || ||||| ||||| || Sbjct 1940583 GTGCACAGGTTGGAGCTGCGAATAGTTCCCAGGTTCTTCTGGTTGCTCTTCTTGTTGCAA 1940524 Query 62867 GCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTC 62926 |||||||| || || ||||| || ||||||| ||| |||| | || | ||| || | | Sbjct 1940523 GCATCCTTGTACAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCAAGAATGGCATAC 1940464 Query 62927 CAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGT----G 62981 |||| | || ||||||| || | || | | ||| ||| || | | Sbjct 1940463 CAGA-GCTTCTGAGCCTTAATGGTC--TTGCGGCCACGGCCCTCCTTCTCGTACTTCTCG 1940407 Query 62982 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGAC 63041 || | | | |||||||| || || | |||| | || |||| || | || | Sbjct 1940406 TAGAGAGCC--TCGAACTCATCACCGTAGACATCAGCGAGACCAGAGGCCTCGTTGGGGC 1940349 Query 63042 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63101 | | | | ||| || |||| | ||| || || ||||| || ||||||||| |||| | Sbjct 1940348 AGAAGAGAGTCCAGTCACCGTTAGCCTCAACACGCTTCATGAACAGATCAGGAGTCCAGA 1940289 Query 63102 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161 |||| || ||||| | || | | ||| || || || ||||| ||||||| Sbjct 1940288 GAGCGTAGAAGAGATCCCGGGCACGAACTTCTTCCTTACCGTGGTTCTTACGGAGATCGA 1940229 Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221 ||||| | | | ||| | ||||| || |||| ||| ||||| | | ||||| || | Sbjct 1940228 GGAACTCGAAGACATCTGCGTGCCAGGGCTCCAGGTAGATGGCAAACGCACCAGGGCGCT 1940169 Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 |||| || ||||| || | ||| | || |||||||| | || | | ||| |||| || Sbjct 1940168 TGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTATTGAACACACGGAGCATAGGAACAA 1940109 Query 63282 TACCATTGGATGTACCATTGGTCCC 63306 |||||||||| | |||||||| || Sbjct 1940108 TACCATTGGAGGAGCCATTGGTTCC 1940084 >seq61 Length=2613024 Score = 120 bits (132), Expect = 4e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| |||||||| ||| ||||||||||| | | ||| | ||||||||| || ||||| Sbjct 818121 ACAAGCGAAATCAGTGTGGAGACCCTCGTCACGAGAAATGAGTTCGTTGGAGAAGGTGAG 818062 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAA 32779 |||||||| || |||||||| || ||||| || ||||| || || || ||||| ||||| Sbjct 818061 ACCGGGCATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCAGAGAAGAA 818002 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAA 32805 || || || || || || ||||||| Sbjct 818001 GATACCCTCGACAGCAGCGAAGGCAA 817976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631485174000