Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq61 167 5e-36 seq48 123 5e-23 >seq61 Length=2613024 Score = 167 bits (184), Expect = 5e-36 Identities = 298/426 (70%), Gaps = 12/426 (3%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 ||||| ||| ||||| |||||||| || | |||||| |||| ||||| |||| Sbjct 818408 TGATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCCAGGGAGATGGACTCC 818349 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| | | ||||| | ||| | |||||| || |||| || Sbjct 818348 ATGAAGTCGAAGGGGTTGGCAGAGTTGTAGTACTTCTTGTTGCCAAGGGCCACGAGGAGA 818289 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || |||||||| | ||||| | ||| || | | ||||||||||| || | | Sbjct 818288 CGGTCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCAAGCAGGCCA 818229 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT--TG 251779 || |||| || ||| || ||| |||| ||| | |||| | |||| ||||| || Sbjct 818228 CAGGGAAGAGCGTCAGTGAGGAACTCCTGCTCGATACCAACGG---CCTCGACAATGATG 818172 Query 251780 CCTTCACCTGTGCCAGAGA-CA-GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAA 251836 ||||| | | | | || || | || | ||| | ||| | ||||| | || || Sbjct 818171 TCTTCAAC-GACCTTGGGATCAGGGCGGTGGTTCAGGTGAGAGAAGAGGAGACAAGCGAA 818113 Query 251837 A-CTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGC 251895 | | || ||| ||||||||||| ||| |||| |||||||| | || || ||| Sbjct 818112 ATCAGT--GTGGAGACCCTCGTCACGAGAAATGAGTTCGTTGGAGAAGGTGAGACCGGGC 818055 Query 251896 ATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCC 251955 |||| ||||| ||| ||||||||||||| | | ||||| |||||||| | | |||| Sbjct 818054 ATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCAGAGAAGAAGATACCC 817995 Query 251956 TCGACA 251961 |||||| Sbjct 817994 TCGACA 817989 >seq48 Length=3188669 Score = 123 bits (136), Expect = 5e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| ||||||||||| ||| Sbjct 904175 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTGGCTTACGGTGCCAAGATTCTGCTGAAC 904116 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | ||||||||||| | || || |||||| | || ||||| || | Sbjct 904115 CAGACTCACCTGCGCCTCAAGCGTGGCCAGCGTTACGGTCTCCTGGGCCCCAACGGTTCC 904056 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 ||||||| ||| || |||||||| || |||| ||||| || || || || || Sbjct 904055 GGTAAGACCACCCTCATGCGCGCTATCAACAACGAGCAGCTCGAGGGTTTCCCCAAGAAG 903996 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 |||||| | ||| || || || ||||||||| ||||||| Sbjct 903995 GATGAGGTCAAGACCGTCTACGTCGAGCACGACCTCGACTC 903955 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || |||||||| || || |||||| ||||| | ||| ||| || Sbjct 902770 CTCACTCCCGTATGCGCGGTCTCTCCGGTGGCCAGCGTGTCAAGGTCGTCCTCGCCGCTT 902711 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | || ||||| ||||| |||||||||||||||||||| || ||||| Sbjct 902710 GCTC-GTGGCAGCGTCCCCACGTCATCGTCCTCGACGAGCCTACCAACTACCTCGACCGT 902652 Query 280821 GA 280822 || Sbjct 902651 GA 902650 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || |||||||||||||||||||| || || || ||| | | | | ||||| Sbjct 903809 CTCTCTGGTGGTTGGAAGATGAAGCTCGCTCTGTGCCGTGCCGTCTTCGAGAGCCCCGAT 903750 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 | || ||||| || ||||| ||||||||| ||||| || ||||| || ||||| | | Sbjct 903749 ATTCTCCTGCTCGACGAGCCCACCAACCACTTGGACGTCAAGAACGTCGCATGGCTCGAG 903690 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| | |||| || ||||| |||| ||||| ||||||||| ||||| Sbjct 903689 AACTACCT--CAAGTCCTCCCCTTG-CACTTCCATCATGGTCTCCCACGACTCTCGCTTC 903633 Query 279885 CTAGA 279889 || || Sbjct 903632 CTTGA 903628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835944004665