Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq2 168 8e-37 seq55 136 4e-27 seq12 107 2e-18 >seq2 Length=3819764 Score = 168 bits (186), Expect = 8e-37 Identities = 169/217 (78%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| |||| ||||||||||| |||||||||||||| || || |||||| | Sbjct 1934837 ACGGAGCACCAAGTGCAGGGTACTCTCCTTCTGGATATTGTAGTCAGAAAGGGTGCGCCC 1934778 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||| |||||||| || | ||||||||||| | || | | |||||| Sbjct 1934777 GTCCTCCAGCTGCTTACCGGCGAAGATAAGACGCTGCTGGTCTGGGGGGATACCCTCCTT 1934718 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGA 46556 |||| |||||| |||| | ||| | | | |||||| |||||||| |||| ||||| Sbjct 1934717 GTCCTGGATCTTGCTCTT-AACGTTGTCGATCGTGTCAGATGATTCCACTTCCAGCGTGA 1934659 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || || ||||| |||||||| Sbjct 1934658 TGGTCTTGCCAGTGAGTGTCTTGACAAAAATTTGCAT 1934622 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| | || || |||||||| |||||||| Sbjct 1934357 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAA 1934298 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||||| || | | |||||| ||| ||||| ||||| ||| Sbjct 1934297 GATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGAATCTTGGACTTGA-CGT 1934239 Query 46522 CGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| || || || || || || | Sbjct 1934238 TGTCGATGGTGTCGGAAGACTCAACTTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTTA 1934179 Query 46581 CAAAGATTTGCAT 46593 | ||||||||||| Sbjct 1934178 CGAAGATTTGCAT 1934166 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| ||||||||||| || ||||| | || || |||||||| ||||| || Sbjct 1934584 TCCTTTTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAG 1934525 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||| | || | || ||||| ||| |||||| ||||| | Sbjct 1934524 ATAAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATCTTTGACTTGACGTTA 1934465 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || || ||| || || |||| |||||||| || || || || || || || Sbjct 1934464 TCGATGGTATCCGACGACTCTACCTCCAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACG 1934405 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 1934404 AAAATTTGCAT 1934394 Score = 86.0 bits (94), Expect = 7e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || ||||||||| || || || | || || ||||||||||| ||||| Sbjct 1934129 CTCCTTCTGAATGTTGTAGTCGCTCAGGGTACGGCCATCCTCAAGCTGCTTGCCTGCGAA 1934070 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||||| | || | || ||||| ||| ||||| ||||| | Sbjct 1934069 AATCAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGAATCTTGGACTTGACATT 1934010 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCA 46571 | | |||||| || || || || | |||||||| ||||| |||| Sbjct 1934009 GTCGATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTGCCGGTCA 1933960 >seq55 Length=3282825 Score = 136 bits (150), Expect = 4e-27 Identities = 141/182 (77%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||| ||||||||| || ||||| | || |||||||||||||||||||| | Sbjct 2333831 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 2333890 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| |||||||||||| | || | || |||||||||| |||||| |||||| ||| | Sbjct 2333891 TCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGA-CGTTG 2333949 Query 46524 -CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||||||||| || || || | || ||||| || |||||||| || || || Sbjct 2333950 TCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 2334009 Query 46583 AA 46584 || Sbjct 2334010 AA 2334011 >seq12 Length=2198207 Score = 107 bits (118), Expect = 2e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || |||||||| |||| |||||||||||||||||||| Sbjct 1200388 CTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 1200329 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 |||| |||||||||||| | || | | ||||||||| Sbjct 1200328 GATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 1200290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237940743800