Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2 152 1e-31 seq56 113 1e-19 seq55 109 1e-18 seq12 89.7 1e-12 >seq2 Length=3819764 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||||||||| || || || ||||| |||| ||||| | ||||| || Sbjct 1934374 ACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCCTCA 1934315 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| ||||| || || || || || ||| Sbjct 1934314 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCCTGA 1934255 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| ||| || |||||||| || | |||||| Sbjct 1934254 ATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCAAGAGTGATGGTCTTT 1934195 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | |||||| Sbjct 1934194 CCGGTGAGGGTCTTTACGAAGATTTGCAT 1934166 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| |||||||| || ||||| || ||||| |||| || || | ||||| || Sbjct 1934602 ACAAGGTGCAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 1934543 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || |||||||| ||||| ||||| || || |||||||| || || || Sbjct 1934542 AGCTGCTTACCGGCAAAGATAAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGG 1934483 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || ||| ||||||||| || ||||| ||||| || || || || || | |||||| Sbjct 1934482 ATCTTTGACTTGACGTTATCGATGGTATCCGACGACTCTACCTCCAGAGTGATGGTCTTT 1934423 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 1934422 CCGGTGAGGGTCTTCACGAAAATTTGCAT 1934394 Score = 143 bits (158), Expect = 6e-29 Identities = 144/187 (77%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||| |||||||| || ||||| ||||| ||| || || | ||||| || Sbjct 1934146 ACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTACGGCCATCCTCA 1934087 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| |||||||| || || || || ||||| |||||||||||||| || || ||| Sbjct 1934086 AGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCCTGA 1934027 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || || |||||||| ||| || || ||||| || | ||||| Sbjct 1934026 ATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTCTTG 1933967 Query 195112 CCTGTCA 195118 || |||| Sbjct 1933966 CCGGTCA 1933960 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 194949 CTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAA 195008 ||| || || |||||||| || | ||| || | ||| || || ||||||||||| ||||| Sbjct 1934813 CTCCTTCTGGATATTGTAGTCAGAAAGGGTGCGCCCGTCCTCCAGCTGCTTACCGGCGAA 1934754 Query 195009 GATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTT 195068 |||||| || || |||||||| || || || || ||||| || || || ||| ||||| Sbjct 1934753 GATAAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTAACGTT 1934694 Query 195069 CTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128 || || ||||| || ||||||||| || || | ||||| || || | || || || Sbjct 1934693 GTCGATCGTGTCAGATGATTCCACTTCCAGCGTGATGGTCTTGCCAGTGAGTGTCTTGAC 1934634 Query 195129 GAACACTTGCAT 195140 || | |||||| Sbjct 1934633 AAAAATTTGCAT 1934622 >seq56 Length=3289960 Score = 113 bits (124), Expect = 1e-19 Identities = 193/280 (69%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 160589 TTCTACGCCATCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGG 160648 |||||||| |||||||| | ||||| ||||||||| | || | | || || || ||| Sbjct 1940279 TTCTACGCTCTCTGGACTCCTGATCTGTTCATGAAGCGTGTTGAGGCTAACGGTGACTGG 1940338 Query 160649 AGCCTTTTCTGTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAG 160708 | || ||||| ||||| || || |||| || | |||||| || ||| ||||||||| Sbjct 1940339 ACTCTCTTCTGCCCCAACGAGGCCTCTGGTCTCGCTGATGTCTACGGTGATGAGTTCGAG 1940398 Query 160709 ACTCTTTATGAAAGATACGAAAAAGAGGGAAGAGCCAAAAAGGTCGTGAAGGCCCAAGAA 160768 |||| || || | ||||| || ||||| | | | ||| | | ||||| || | Sbjct 1940399 GCTCTCTACGAGAAGTACGAGAAGGAGGGCCGTGGCCGCAAGACCATTAAGGCTCAGAAG 1940458 Query 160769 CTGTGGCATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAG 160828 || ||| || ||| |||| ||||| ||| |||| ||||| || |||||| Sbjct 1940459 CTCTGGTATGCCATTCTTGAGGCCCAGACTGAGACTGGTAACCCCTTCATGCTGTACAAG 1940518 Query 160829 GATGCCATCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 ||||| | ||||| |||||||||||| | |||| Sbjct 1940519 GATGCTTGCAACAAGAAGAGCAACCAGAAGAACCTGGGAA 1940558 >seq55 Length=3282825 Score = 109 bits (120), Expect = 1e-18 Identities = 134/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| ||| || || | ||||| ||||||||||| || |||||||| Sbjct 2333833 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 2333892 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || |||||||| || ||||| || || || ||||||||| || Sbjct 2333893 AGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 2333952 Query 195073 ATGGTGTC---CGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACG 195129 |||||||| ||| || || || ||||||| ||||| || |||| || || ||| Sbjct 2333953 ATGGTGTCGCTCGA---CTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 2334009 Query 195130 AA 195131 || Sbjct 2334010 AA 2334011 >seq12 Length=2198207 Score = 89.7 bits (98), Expect = 1e-12 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| || ||||| || || || ||||| || | |||||| | || || ||| Sbjct 1200405 ACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCCTCG 1200346 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 |||||||| || |||||||| || || || ||||| || || || || || |||||| Sbjct 1200345 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTCT 1200289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480676009855