Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq56 138 1e-27 seq2 102 7e-17 >seq56 Length=3289960 Score = 138 bits (152), Expect = 1e-27 Identities = 468/718 (65%), Gaps = 21/718 (3%) Strand=Plus/Minus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATC-GCGAC 139360 ||||||||| |||||||| | ||||| ||||||||| | |||| ||| | | | | Sbjct 1940419 CTCGTACTTCTCGTAGAGAGCCTCGAACTCATCACCGTAGACATCAGCGAGACCAGAGGC 1940360 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 || || || || | ||| | ||| | ||||| |||| || ||| |||||||||||| Sbjct 1940359 -CTCGTTGGGGCAGAAGAGAGTCCAGTCACCGTTAGCCTCAACACGCTTCATGAACAGAT 1940301 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTAC 139480 | ||| |||| | |||| | | | ||| || || |||||| ||| ||| Sbjct 1940300 CAGGAGTCCAGAGAGCGTAGAAGAGATCCCGGGCACGAACTTCTTCCTTACCGTGGTTC- 1940242 Query 139481 GTTTC--ATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 || | | | ||||| || || || || |||||||| || ||||| |||||||| | Sbjct 1940241 -TTACGGAGATCGAGGAACTCGAAGACATCTGCGTGCCAGGGCTCCAGGTAGATGGCAAA 1940183 Query 139539 TGCGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCG 139595 || || || ||| ||||| || || |||| || ||| |||||||| || || Sbjct 1940182 CGCACCAGGGCGCTTGTTACCACCCTGGTCAACGTAGCGGGCAGTGTTATTGAACACACG 1940123 Query 139596 CAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG---GGACTGTTGCG 139652 | ||| || | | ||| | | | || ||||| | || ||| | || | || Sbjct 1940122 GAGCATAGGAACAATACCATTGGAGGAGCCATTGGTTCCACCAATGTAGGAACCGGTG-- 1940065 Query 139653 AGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCA 139712 || |||| | || ||||| | || || || || | ||||| || | | | || Sbjct 1940064 -GCACGGATGCGGTGAACATTCAAACCAATGCCACCAGCGGTCTTGGAAATCATAGCACA 1940006 Query 139713 ATCGCGTAAT-GTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGC 139771 | ||| || ||||| ||||| |||||||| | ||| |||||| |||| Sbjct 1940005 GGT-CTTAAGAGTGTCGTAGATACCCTCAATGCTGTCTGCGGACATGTCGACCAGGAAGC 1939947 Query 139772 ATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGA 139831 | || | ||| || || | ||| |||| || ||||| || ||||| |||| Sbjct 1939946 AAGAAGCAAGCTGGGGCTGGGGAGTGGCGGCGTTGAAGAGAGTGGGGGAGGCGTGGGTGA 1939887 Query 139832 ACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGA 139891 | | || |||||||| | ||| || || ||||| || | || ||| ||||||| Sbjct 1939886 AGTACTTTTGGGACATCAAGTGGTAGGTCTCAATGGCCTTCTCGATGTCCTCGCCGTGGA 1939827 Query 139892 TACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAttt 139951 ||||||||| || |||||||||| || ||| || ||||| || ||| | ||| Sbjct 1939826 TACCGACAGCAACGCGCATCAGCAGGTGCTGGGGACGCTCGGCAACACTGCCGTTGATAC 1939767 Query 139952 ttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATCG 140007 ||||| | || ||| ||||||||| | || ||| | | |||||||| ||| Sbjct 1939766 GGAGAAGATATGAACG--CTCCAGGGTCTTGAAACCGAAGAAGTTGTAGTTGAAGTCG 1939711 >seq2 Length=3819764 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || ||||| || || || || || || ||||| | | Sbjct 1934394 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTGGAGGTAGAGTCGTCG 1934453 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||||||| || || ||||| || || || || || Sbjct 1934454 GATACCATCGATAACGTCAAGTCAAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 1934513 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| || ||||| |||||| | | | |||| || || ||| Sbjct 1934514 CAACGTCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAAC 1934573 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 || ||||||||||| || || ||| Sbjct 1934574 ATCCAAAAGGAATCCACTCTGCAC 1934597 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | || || || || || || || || ||||| ||||| ||| | | Sbjct 1934622 ATGCAAATTTTTGTCAAGACACTCACTGGCAAGACCATCACGCTGGAAGTGGAATCATCT 1934681 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | || |||||| ||||| || || || || || || || Sbjct 1934682 GACACGATCGACAACGTTAAGAGCAA-GATCCAGGACAAGGAGGGTATCCCCCCAGACCA 1934740 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||| ||||| || ||||||||||| | | | | | || || || || Sbjct 1934741 GCAGCGTCTTATCTTCGCCGGTAAGCAGCTGGAGGACGGGCGCACCCTTTCTGACTACAA 1934800 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || ||||||||| | || |||| || || Sbjct 1934801 TATCCAGAAGGAGAGTACCCTGCACTTGGTGCTCCGTCTGCGTGGTGG 1934848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897234458200