Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq48 185 3e-41 seq2 154 4e-32 seq46 109 2e-18 >seq48 Length=3188669 Score = 185 bits (204), Expect = 3e-41 Identities = 683/1061 (64%), Gaps = 12/1061 (1%) Strand=Plus/Plus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| || ||||| || ||||| || || || | |||||| || || || || || Sbjct 552159 GCTGTCATCACTGTCCCCGCCTACTTCAACGACTCTCAGCGTCAGGCTACCAAGGACGCC 552218 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || || || | || ||||| || ||||||||||| || || Sbjct 552219 GGTCTCATTGCTGGTCTCAACGTCCTCCGTATCATTAACGAGCCCACTGCTGCTGCTATC 552278 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || ||||| || | | || || || | || || || ||| | ||| Sbjct 552279 GCTTACGGTCTTGACAAGAAGGTCGAGGGTGAGCGCAACGTCCTGATCTTCGATCTGGGT 552338 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 |||||||| || ||||| || || || || | || ||||| || || || || || | Sbjct 552339 GGTGGTACCTTCGATGTGTCTCTCCTCACCATCGAGGAGGGTATCTTCGAGGTCAAGTCC 552398 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 |||||||||||||| || |||||||| || || || || || |||||||| || || Sbjct 552399 ACTGCTGGTGATACTCACCTTGGTGGTGAGGACTTCGACAACCGTCTCGTCAACCACTTC 552458 Query 349910 GTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGAGATAATCCTAGAGCAATGCG 349968 || || || || ||||| ||||| || | || | || | | || | || Sbjct 552459 GTCAACGAGTTCAAGCG-CAAGCACAAGAAGGACCTGACTACCAACGCCCGTGCCCTCCG 552517 Query 349969 TCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTC 350028 ||| || | ||||| || || |||||||||||| || | || ||| || | || ||||| Sbjct 552518 TCGTCTCCGCACTGCTTGCGAGCGTGCTAAGCGTACCCTCTCTTCTGCTGCTCAGACCTC 552577 Query 350029 TATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCG 350088 ||||| || || ||||| || || | || |||| | | || || || ||||| || Sbjct 552578 CATTGAGATCGACTCTCTCTTCGAGGGTATCGACTTCTATACTTCCATCACCCGTGCCCG 552637 Query 350089 GTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATT 350148 || || || | || ||| || || | | || ||||| || || || || | Sbjct 552638 TTTCGAGGAGCTCTGCCAGGACCTCTTCCGTGGCACCATGGAGCCCGTCGAGCGTGTCCT 552697 Query 350149 AAAAGATGC-AAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 || || || | || | | || | | | || | || | || |||||||||| Sbjct 552698 CCGCGACGCTAAGATTGACAAGTCCTCCG-TCCACGAGATCGTCCTCGTCGGTGGTTCTA 552756 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAA-CCTTCT 350266 | ||||| || || | || || | | || || || || || ||| ||| || | Sbjct 552757 CCCGTATCCCCAAGATCCAGAAGCTCGTTTCCGACTTCTTCAA---CAAGGAAGCCAACA 552813 Query 350267 AGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTA 350326 || || || || || ||||| || ||||| || ||||| || || ||||| |||| | Sbjct 552814 AG-TCCATCAACCCCGATGAGGCCGTTGCCTACGGTGCCGCAGTCCAGGCCGCTATCCTG 552872 Query 350327 TCTGGAAATAAGAGTTCTAA---AATTGATGATCTATTACTACTAGATGTAACTCCACTT 350383 ||||| | || ||| || | | || | | || || || || | || || Sbjct 552873 TCTGGTGACCAGTCTTCCAAGTCCACCAACGAGATCCTCCTGCTCGACGTTGCCCCTCTG 552932 Query 350384 TCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACT 350443 || || || | || ||| | |||| || ||||||| ||| || | || | ||| Sbjct 552933 TCCCTCGGTATCGAGACTGCCGGTGGTGTCATGACTGCTCTGATCAAGCGTAACACCACT 552992 Query 350444 GTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACA 350503 | || || || |||||| | || || || || | | || || ||||| | || Sbjct 552993 ATCCCCACCAAGAAGTCCGAGACCTTCTCCACCTACTCCGACAACCAGCCCGGTGTCCTG 553052 Query 350504 ATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTT 350563 || || || || || ||||| ||||||||||| || || || || || || | || Sbjct 553053 ATCCAGGTCTTCGAGGGTGAGCGTGCTCGCACCAAGGACAACAACTTGCTCGGCAAGTTC 553112 Query 350564 ACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGAT 350623 || | || ||||| || || | || || || |||||||| ||| | ||||| Sbjct 553113 GAGCTCACTGGCATTCCCCCCGCCCCCCGTGGTGTCCCCCAGATTGAGGTCACCTTCGAC 553172 Query 350624 ATTGATTCAAATGGTATTTTAAATGTTACCGCAGTTGAAAA 350664 |||| | || || || | || || |||| || || || Sbjct 553173 CTTGACGCCAACGGAATCATGAACGTCTCCGCCGTCGAGAA 553213 >seq2 Length=3819764 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| ||||| ||||| || || || || | Sbjct 1934400 TTTGCATACCACCACGGAGGCGGAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGT 1934341 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || ||||| || ||||| ||||| ||||| | Sbjct 1934340 AGTCGGAGAGAGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGT 1934281 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | ||||| || || || ||||||||||| || | || || || || || | || || | Sbjct 1934280 CGGGAGGGATACCCTCCTTATCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAG 1934221 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||||||| || | ||||||||||| || || ||||| || || ||||| Sbjct 1934220 ACTCAACTTCAAGAGTGATGGTCTTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 1934166 Score = 154 bits (170), Expect = 4e-32 Identities = 175/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| || ||||| || || ||||| || || | Sbjct 1934628 TTTGCATACCACCACGGAGACGGAGGACAAGGTGCAGAGTGGATTCCTTTTGGATGTTGT 1934569 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || ||||| ||||| || || || |||||||| ||||||||||| | Sbjct 1934568 AGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTACCGGCAAAGATAAGACGTTGCTGGT 1934509 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || ||||| |||||||| || || | || || ||||| || | ||| || | Sbjct 1934508 CAGGGGGGATGCCTTCCTTATCCTGGATCTTTGACTTGACGTTATCGATGGTATCCGACG 1934449 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | ||||||||||| || || || || ||||| ||||| Sbjct 1934448 ACTCTACCTCCAGAGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 1934394 Score = 129 bits (142), Expect = 2e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || ||||| ||||| || ||||| || ||||| || | Sbjct 1934172 TTTGCATACCACCACGGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGT 1934113 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | || || ||||| ||||| || || || || || || || || ||||| | Sbjct 1934112 AGTCGCTCAGGGTACGGCCATCCTCAAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGT 1934053 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||||||||| ||||| ||||||||||| || | || ||||| || || | || || | Sbjct 1934052 CAGGAGGAATGCCTTCCTTATCCTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAG 1933993 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGT 140713 ||||| ||||| || | ||||| ||||| Sbjct 1933992 ACTCAACCTCAAGAGTGATGGTCTTGCCGGT 1933962 >seq46 Length=704785 Score = 109 bits (120), Expect = 2e-18 Identities = 102/129 (79%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || || |||||| | || || ||| ||||||| ||||||||||||||||| || || Sbjct 217513 CGGGGTACACCAAGGGTGACGTTC---TTAGATGACACACCAGCAAAGTGGAAGGTGTTC 217569 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | ||||||| ||||||||||| ||||| ||||||| || ||||||||||| Sbjct 217570 AGGGTCATCTGAGTAGCAGGCTCACCAATAGACTGGGCTGCAAGGACACCAACCATTTCA 217629 Query 377578 CCAGGATTG 377586 ||||| ||| Sbjct 217630 CCAGGGTTG 217638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253138077195