Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq61 143 3e-29 seq55 123 3e-23 seq12 93.3 5e-14 seq56 87.8 2e-12 >seq2 Length=3819764 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || ||||| || ||||| ||||| || |||||||| |||||||| Sbjct 1934166 ATGCAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACTCTTGAAGTTGAGTCTTCC 1934225 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || |||||||| |||||||| || ||||| |||||| Sbjct 1934226 GACACCATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAG 1934285 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| ||| || || | ||||| || Sbjct 1934286 CAGCGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTCTCTCCGACTACAAC 1934345 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| ||| | || || || ||||| Sbjct 1934346 ATCCAGAAGGAGTCCACTCTCCATCTCGTCCTCCGCCTCCGTGGTGG 1934392 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || ||||| ||||| || ||||| ||||| ||||| Sbjct 1934394 ATGCAAATTTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTGGAGGTAGAGTCGTCG 1934453 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | ||| | || || ||||| ||||| || || || || |||||| Sbjct 1934454 GATACCATCGATAACGTCAAGTCAAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAG 1934513 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || ||||| |||||||| || ||||||| || ||||| | ||||| || Sbjct 1934514 CAACGTCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAAC 1934573 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||||||||||||||||| || || ||| | ||||| || ||||| Sbjct 1934574 ATCCAAAAGGAATCCACTCTGCACCTTGTCCTCCGTCTCCGTGGTGG 1934620 Score = 158 bits (174), Expect = 1e-33 Identities = 159/204 (78%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 ||||||||||| || ||||||||||||||||| || | ||| | ||| | ||| | Sbjct 1933962 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGTCC 1934021 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || |||||||| ||||| || |||||||| ||||||||||| || ||||| || || ||| Sbjct 1934022 AAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAGCAGCGCCTGATTTTCGCAGGCAAG 1934081 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 || || ||||||| |||||||| ||| ||||| || | || ||||| ||||| ||||| Sbjct 1934082 CAGCTTGAGGATGGCCGTACCCTGAGC-GACTACAACATTCAGAAGGAGTCCACCCTTCA 1934140 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 1934141 CCTTGTCCTCCGCCTCCGTGGTGG 1934164 Score = 140 bits (154), Expect = 4e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||||||||| || || |||||||| || || || || || || ||| | Sbjct 1934622 ATGCAAATTTTTGTCAAGACACTCACTGGCAAGACCATCACGCTGGAAGTGGAATCATCT 1934681 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| || || |||||||||||||| || || ||||||||| Sbjct 1934682 GACACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAG 1934741 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || |||||||| || ||||| | || ||||| | ||||| ||| Sbjct 1934742 CAGCGTCTTATCTTCGCCGGTAAGCAGCTGGAGGACGGGCGCACCCTTTCTGACTACAAT 1934801 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || || || | || | ||||| || ||||| || Sbjct 1934802 ATCCAGAAGGAGAGTACCCTGCACTTGGTGCTCCGTCTGCGTGGTGGTCA 1934851 >seq61 Length=2613024 Score = 143 bits (158), Expect = 3e-29 Identities = 332/497 (67%), Gaps = 9/497 (2%) Strand=Plus/Plus Query 64663 AAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGTGGGTCGTCGTTTGGTCAGCGT 64719 || ||||| || ||||||||||| ||||| ||| || |||| | || | | |||| Sbjct 817912 AAGAAGGCCGAGTGGGCCATCCGTTGGATCAATGACACTGAGTCGACCTTCGCTTCGCGT 817971 Query 64720 CTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTTC 64779 || | || || || ||| || || || ||||| ||||| || ||| || || ||| Sbjct 817972 CTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCCTCCATCTTC 818031 Query 64780 TGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCGG 64839 ||||| || ||||| || |||||||| ||||| | || || ||||| || || ||||| Sbjct 818032 TGGCTCAAGAAGCGTGGTCTGATGCCCGGTCTCACCTTCTCCAACGAACTCATTTCTCGT 818091 Query 64840 GACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGACAAACC- 64898 |||||||| |||||| || || || | ||| ||| ||||| || || || Sbjct 818092 GACGAGGGTCTCCACACTGATTTCGCTTGTCTCCTCTTCTCTCACCTGAACCACCGCCCT 818151 Query 64899 -ATCACATGGGACTATAATTGAT-ATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTC 64956 ||| || || | || || || || | ||| || | || || |||| ||| Sbjct 818152 GATCCCAAGGTCGTTGAAGACATCATTGTCGA---GGCCGTTGGTATCGAGCAGGAGTTC 818208 Query 64957 ATTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTAT 65016 | |||| ||| ||||| ||| | || | |||||| | ||| | ||| ||||| Sbjct 818209 CTCACTGACGCTCTTCCCTGTGGCCTGCTTGGCATGAACGCCAAGCTCATGTGCCAGTAC 818268 Query 65017 ATCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATTAAGCCCTACTGGAATTCT 65076 ||||| ||||| || || || || || |||| | ||| |||| || ||| Sbjct 818269 ATCGAGTTTGTCGCTGACCGTCTCCTCGTGGCCCTTGGCAACAAGAAGTACTACAACTCT 818328 Query 65077 TCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAA 65136 | || || || |||| |||||| | ||| ||||| || ||||| ||||| || || Sbjct 818329 GCCAACCCCTTCGACTTCATGGAGTCCATCTCCCTGGCTGGCAAGACCAACTTCTTCGAG 818388 Query 65137 AAGAGGGTAGGTGATTA 65153 ||| | || ||||| || Sbjct 818389 AAGCGTGTCGGTGACTA 818405 >seq55 Length=3282825 Score = 123 bits (136), Expect = 3e-23 Identities = 140/185 (76%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || || ||||| ||||| || || || ||||| | || | ||| Sbjct 2334011 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCATC 2333952 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| | || || |||||||||||||| ||||| || ||||||||||| || Sbjct 2333951 GACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGCCTG 2333892 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAA 27593 || || || || ||||| |||||||||| || ||||| ||| ||||| || |||| || Sbjct 2333891 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTACAACATCCAGAA 2333833 Query 27594 GGAAT 27598 || || Sbjct 2333832 GGTAT 2333828 >seq12 Length=2198207 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||| || || || ||||||||||| || || || || || ||||| |||||| Sbjct 1200290 GACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1200349 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | || || || | ||||| || |||| ||||| || || ||||| || ||| | Sbjct 1200350 GACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGTCCTC 1200409 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 1200410 CGCCTGCGTGGTGG 1200423 >seq56 Length=3289960 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || |||| ||||||||||| ||||| || ||| ||||||||||| | |||||| || Sbjct 1941519 GTGCGCAAGTAGTACATGCCGGTCTTCAGACCCATCTTCCAGCCGGCGAAGTGCATGGAG 1941460 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | ||||| | || || | ||||||||| ||||| ||||| |||| Sbjct 1941459 GTGATCTTGCCCATGGTGGGCTCCTTCAGGTGGATGTTCAGGGACTGGGACTGGTCGATG 1941400 Query 80158 AAAGCCCCACGATCTGCCGCCAT 80180 | || || || || || ||||| Sbjct 1941399 TAGGCACCGCGGTCGGCGGCCAT 1941377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309936622800