Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2 185 2e-41 seq56 147 5e-30 seq55 131 4e-25 seq12 107 4e-18 >seq2 Length=3819764 Score = 185 bits (204), Expect = 2e-41 Identities = 168/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| |||||||| || ||||||||||| || || | ||||| | ||||| Sbjct 1934605 AGGACAAGGTGCAGAGTGGATTCCTTTTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 1934546 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||||||| ||||| |||||||| || | |||||||| ||| Sbjct 1934545 TCAAGCTGCTTACCGGCAAAGATAAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTATCC 1934486 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || ||||| |||||||| || || || ||||| |||||||| ||| Sbjct 1934485 TGGATCTTTGACTTGACGTTATCGATGGTATCCGACGACTCTACCTCCAGAGTGATGGTC 1934426 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| ||||| || || | ||||| Sbjct 1934425 TTTCCGGTGAGGGTCTTCACGAAAATTTGCAT 1934394 Score = 163 bits (180), Expect = 7e-35 Identities = 149/188 (79%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||||||||| |||||||| || || ||||| || || ||||| | ||||| Sbjct 1934149 AGGACAAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCGCTCAGGGTACGGCCATCC 1934090 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||||||||| || ||||| || ||||||||||||| |||||||| ||| Sbjct 1934089 TCAAGCTGCTTGCCTGCGAAAATCAGGCGCTGCTGGTCAGGAGGAATGCCTTCCTTATCC 1934030 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||||||||| || |||||||| |||||||| ||| Sbjct 1934029 TGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCAAGAGTGATGGTC 1933970 Query 211083 TTTCCCGT 211090 || || || Sbjct 1933969 TTGCCGGT 1933962 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||||||||| || |||||||| || || | || || | ||||| Sbjct 1934377 AGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCC 1934318 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || || ||||| ||||| | || ||||| ||| Sbjct 1934317 TCAAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCGGGAGGGATACCCTCCTTATCC 1934258 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || ||||| ||||||||||| || ||||| || |||||||| ||| Sbjct 1934257 TGAATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCAACTTCAAGAGTGATGGTC 1934198 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||| || | ||||| Sbjct 1934197 TTTCCGGTGAGGGTCTTTACGAAGATTTGCAT 1934166 Score = 143 bits (158), Expect = 6e-29 Identities = 147/192 (77%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210923 CTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAA 210982 ||| || ||||| || || || | |||||| | || || ||||||||||| || ||||| Sbjct 1934813 CTCCTTCTGGATATTGTAGTCAGAAAGGGTGCGCCCGTCCTCCAGCTGCTTACCGGCGAA 1934754 Query 210983 GATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTT 211042 |||||| || || ||||| || || | || ||||||||||||||||| || ||||| Sbjct 1934753 GATAAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGCTCTTAACGTT 1934694 Query 211043 TTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||| |||||||| ||| || || || ||||| ||||| || ||||| ||||| || Sbjct 1934693 GTCGATCGTGTCAGATGATTCCACTTCCAGCGTGATGGTCTTGCCAGTGAGTGTCTTGAC 1934634 Query 211103 AAACACCTGCAT 211114 ||| | ||||| Sbjct 1934633 AAAAATTTGCAT 1934622 >seq56 Length=3289960 Score = 147 bits (162), Expect = 5e-30 Identities = 203/283 (72%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 178086 TTCCAAAGTTCTTTTGGTTGCTCTTTCTG---CAAATGGCATCTTTGTACGCAATGAAGG 178142 |||| | |||||| ||||||||||| || ||| ||||| |||||| ||||||| Sbjct 1940558 TTCCCAGGTTCTTCTGGTTGCTCTTCTTGTTGCAA---GCATCCTTGTACAGCATGAAGG 1940502 Query 178143 GCATTCCCACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAG 178202 | | || ||||| || ||| | |||||| || ||| |||| ||| || | | Sbjct 1940501 GGTTACCAGTCTCAGTCTGGGCCTCAAGAATGGCATACCAGAGCTTCTGAGCCTTAATGG 1940442 Query 178203 TCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCAT 178262 |||| | | || || ||||||||||| | |||||| ||||||| || || | Sbjct 1940441 TCTTGCGGCCACGGCCCTCCTTCTCGTACTTCTCGTAGAGAGCCTCGAACTCATCACCGT 1940382 Query 178263 AGACATCATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCT 178322 |||||||| ||||||| | ||||| ||||||||||||||| |||| | ||||| ||| Sbjct 1940381 AGACATCAGCGAGACCAGAGGCCTCGTTGGGGCAGAAGAGAGTCCAGTCACCGTTAGCCT 1940322 Query 178323 TCACTCGTTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 || || |||||||| || |||| ||||||| || ||||| Sbjct 1940321 CAACACGCTTCATGAACAGATCAGGAGTCCAGAGAGCGTAGAA 1940279 >seq55 Length=3282825 Score = 131 bits (144), Expect = 4e-25 Identities = 139/182 (76%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || ||||| | ||||| || ||||||||||| |||||||| Sbjct 2333833 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 2333892 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 ||||| || |||||||| |||| || ||||||||||||||||| || ||||| ||| Sbjct 2333893 AGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 2333952 Query 211047 ATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACA 211103 |||||||| ||| || || ||||| || || ||||| ||||| || ||||| || Sbjct 2333953 ATGGTGTC---GCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 2334009 Query 211104 AA 211105 || Sbjct 2334010 AA 2334011 >seq12 Length=2198207 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||||| || |||||||| || |||| ||| || | || || Sbjct 1200408 AGGACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCGTCC 1200349 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| ||||| || |||||||| || | || |||||||| Sbjct 1200348 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGGATACCCTCCTTGTC 1200290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151034643725