Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943765.1_202015-03- 04] 65 sequences; 34,374,118 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 178 3e-39 seq56 116 9e-21 seq55 114 3e-20 seq12 84.2 5e-11 >seq2 Length=3819764 Score = 178 bits (196), Expect = 3e-39 Identities = 163/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||||||||| || ||||| ||||| || ||||| || ||||| || || || Sbjct 1934397 CAAATTTTCGTGAAGACCCTCACCGGAAAGACCATCACTCTGGAGGTAGAGTCGTCGGAT 1934456 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||| ||||| || ||||| ||||| || ||||||||| Sbjct 1934457 ACCATCGATAACGTCAAGTCAAAGATCCAGGATAAGGAAGGCATCCCCCCTGACCAGCAA 1934516 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||| ||||| || ||||| || ||||| | || || |||| || ||| || Sbjct 1934517 CGTCTTATCTTTGCCGGTAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATC 1934576 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||| ||||| || ||||| ||||| Sbjct 1934577 CAAAAGGAATCCACTCTGCACCTTGT 1934602 Score = 159 bits (176), Expect = 8e-34 Identities = 159/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || ||||| ||||| || ||||| || || || || || ||| Sbjct 1934169 CAAATCTTCGTAAAGACCCTCACCGGAAAGACCATCACTCTTGAAGTTGAGTCTTCCGAC 1934228 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||||||||| || || || |||||||| |||||||| Sbjct 1934229 ACCATCGACAACGTCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCTCCCGACCAGCAG 1934288 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||||||||| ||||| || ||||| | ||||| |||| || ||| || Sbjct 1934289 CGTCTCATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACTCTCTCCGACTACAACATC 1934348 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 1934349 CAGAAGGAGTCCACTCTCCATCTCGT 1934374 Score = 127 bits (140), Expect = 5e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || ||||| || || || ||||| || || |||||| || ||| Sbjct 1934625 CAAATTTTTGTCAAGACACTCACTGGCAAGACCATCACGCTGGAAGTGGAATCATCTGAC 1934684 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||| || ||||| |||||||| || || ||||| || |||||||| Sbjct 1934685 ACGATCGACAACGTTAAGAGCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAG 1934744 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || |||||||||||||| || ||||| || || || | || ||| | || || || || Sbjct 1934745 CGTCTTATCTTCGCCGGTAAGCAGCTGGAGGACGGGCGCACCCTTTCTGACTACAATATC 1934804 Query 178104 CAAAAAGA 178111 || || || Sbjct 1934805 CAGAAGGA 1934812 Score = 109 bits (120), Expect = 1e-18 Identities = 135/185 (73%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004 || || || || ||||| || ||||| || || ||||||||||| || ||||| Sbjct 1933962 ACCGGCAAGACCATCACTCTTGAGGTTGAGTCTTCCGACACCATCGACAATGTCAAGTCC 1934021 Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||||||||| || ||||| || ||||| |||||||| || || || ||||| || || Sbjct 1934022 AAGATTCAGGATAAGGAAGGCATTCCTCCTGACCAGCAGCGCCTGATTTTCGCAGGCAAG 1934081 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || ||||| | || || ||| || ||| | || || || || || || || Sbjct 1934082 CAGCTTGAGGATGGCCGTACCCTGAGCGACTACAACATTCAGAAGGAGTCCACCCTTCAC 1934141 Query 178125 CTTGT 178129 ||||| Sbjct 1934142 CTTGT 1934146 >seq56 Length=3289960 Score = 116 bits (128), Expect = 9e-21 Identities = 186/266 (70%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 214128 GTTTTTCTGGTTGCTTTT---GCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCC 214184 ||| ||||||||||| || | |||| ||||| ||||| ||||| || | || Sbjct 1940551 GTTCTTCTGGTTGCTCTTCTTGTTGCAA---GCATCCTTGTACAGCATGAAGGGGTTACC 1940495 Query 214185 CACCTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTT 214244 ||| || || |||||||| || |||||| | || ||||| | | ||| Sbjct 1940494 AGTCTCAGTCTGGGCCTCAAGAATGGCATACCAGAGCTTCTGAGCCTTAATGGTCTTGCG 1940435 Query 214245 GGCTCTTCCCTCGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATC 214304 | | | ||||| || |||||||| || || |||| ||| || || |||||||||||| Sbjct 1940434 GCCACGGCCCTCCTTCTCGTACTTCTCGTAGAGAGCCTCGAACTCATCACCGTAGACATC 1940375 Query 214305 ATCAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCT 214364 | | ||||| | ||||||||||||||||| ||| |||| | || ||| || || | Sbjct 1940374 AGCGAGACCAGAGGCCTCGTTGGGGCAGAAGAGAGTCCAGTCACCGTTAGCCTCAACACG 1940315 Query 214365 TTTCATGAAAAGGTCGGAAGTCCAGA 214390 |||||||| || || | |||||||| Sbjct 1940314 CTTCATGAACAGATCAGGAGTCCAGA 1940289 >seq55 Length=3282825 Score = 114 bits (126), Expect = 3e-20 Identities = 136/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACAC 177985 |||||| || || || || || || || || |||||||| || || ||| ||||| Sbjct 2334012 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGC---GACAC 2333956 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 |||||| |||||||| ||||| |||||||| || || || || || |||||||| || Sbjct 2333955 CATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCG 2333896 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 || ||||||||||| || |||||||| ||||| | || || ||| || ||| |||| Sbjct 2333895 CCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATCCA 2333836 Query 178106 AAA 178108 || Sbjct 2333835 GAA 2333833 >seq12 Length=2198207 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 178014 GACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAA 178073 ||||| || || ||||| || |||||||| || || ||||||||||| || |||||||| Sbjct 1200290 GACAAGGAGGGTATCCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 1200349 Query 178074 GATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || | |||||| | || || ||| |||| || || || || || || || || Sbjct 1200350 GACGGCCGCACTCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTTCACCTCGT 1200405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730197517610