Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943775.1_202015-03- 04] 62 sequences; 34,340,580 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq54 96.9 4e-15 >seq54 Length=3157102 Score = 96.9 bits (106), Expect = 4e-15 Identities = 195/287 (68%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 ||||| ||||| |||||||| ||| | |||||||| ||||||||||| ||||| Sbjct 1794236 ATATAAGTATCAATGAGTAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGG 1794295 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||||| || || || | || || || || || ||| || || | || Sbjct 1794296 AAACCGTAGAAGCAACGAGCCTCGGGAATCTGGACCTCTCCGCTGAAACGCTCGACCAGG 1794355 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATAT 17413 |||||||| ||||| |||||| || ||||| || || | | || ||||| || Sbjct 1794356 TTTTCGTTGACGATACCGTCGGAGGCAGCGAAGAAGGCAAGGACGTGGGAGATGAAGTAA 1794415 Query 17414 TTTTCGTC--CGGTG-TAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCT 17470 || || || || | | ||||||| | | ||| ||||||| ||| | || Sbjct 1794416 CGCTCATCATCGTTGAGGCGGTTGTGCCAGTCGTGGAGATCCTTGGATAGATCAATCTCC 1794475 Query 17471 TCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 || | |||||| ||| ||| | ||||| || ||||| | ||| || Sbjct 1794476 TCAGCGGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATTTGCCAGAT 1794522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517545198902160