Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943775.1_202015-03- 04] 62 sequences; 34,340,580 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq54 167 5e-36 seq8 123 5e-23 >seq54 Length=3157102 Score = 167 bits (184), Expect = 5e-36 Identities = 298/426 (70%), Gaps = 12/426 (3%) Strand=Plus/Plus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 ||||| ||| ||||| |||||||| || | |||||| |||| ||||| |||| Sbjct 1793625 TGATAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCCAGGGAGATGGACTCC 1793684 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||| | | ||||| | ||| | |||||| || |||| || Sbjct 1793685 ATGAAGTCGAAGGGGTTGGCAGAGTTGTAGTACTTCTTGTTGCCAAGGGCCACGAGGAGA 1793744 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || |||||||| | ||||| | ||| || | | ||||||||||| || | | Sbjct 1793745 CGGTCAGCGACAAACTCGATGTACTGGCACATGAGCTTGGCGTTCATGCCAAGCAGGCCA 1793804 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT--TG 251779 || |||| || ||| || ||| |||| ||| | |||| | |||| ||||| || Sbjct 1793805 CAGGGAAGAGCGTCAGTGAGGAACTCCTGCTCGATACCAACGG---CCTCGACAATGATG 1793861 Query 251780 CCTTCACCTGTGCCAGAGA-CA-GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAA 251836 ||||| | | | | || || | || | ||| | ||| | ||||| | || || Sbjct 1793862 TCTTCAAC-GACCTTGGGATCAGGGCGGTGGTTCAGGTGAGAGAAGAGGAGACAAGCGAA 1793920 Query 251837 A-CTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGC 251895 | | || ||| ||||||||||| ||| |||| |||||||| | || || ||| Sbjct 1793921 ATCAGT--GTGGAGACCCTCGTCACGAGAAATGAGTTCGTTGGAGAAGGTGAGACCGGGC 1793978 Query 251896 ATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCC 251955 |||| ||||| ||| ||||||||||||| | | ||||| |||||||| | | |||| Sbjct 1793979 ATCAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGAACCAGAGAAGAAGATACCC 1794038 Query 251956 TCGACA 251961 |||||| Sbjct 1794039 TCGACA 1794044 >seq8 Length=3887683 Score = 123 bits (136), Expect = 5e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| ||||||||||| ||| Sbjct 1607537 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTGGCTTACGGTGCCAAGATTCTGCTGAAC 1607478 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 || | ||| | ||||||||||| | || || |||||| | || ||||| || | Sbjct 1607477 CAGACTCACCTGCGCCTCAAGCGTGGCCAGCGTTACGGTCTCCTGGGCCCCAACGGTTCC 1607418 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 ||||||| ||| || |||||||| || |||| ||||| || || || || || Sbjct 1607417 GGTAAGACCACCCTCATGCGCGCTATCAACAACGAGCAGCTCGAGGGTTTCCCCAAGAAG 1607358 Query 279525 TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTC 279565 |||||| | ||| || || || ||||||||| ||||||| Sbjct 1607357 GATGAGGTCAAGACCGTCTACGTCGAGCACGACCTCGACTC 1607317 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || |||||||| || || |||||| ||||| | ||| ||| || Sbjct 1606132 CTCACTCCCGTATGCGCGGTCTCTCCGGTGGCCAGCGTGTCAAGGTCGTCCTCGCCGCTT 1606073 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 |||| |||||| | || ||||| ||||| |||||||||||||||||||| || ||||| Sbjct 1606072 GCTC-GTGGCAGCGTCCCCACGTCATCGTCCTCGACGAGCCTACCAACTACCTCGACCGT 1606014 Query 280821 GA 280822 || Sbjct 1606013 GA 1606012 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 279705 CTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGAT 279764 || || |||||||||||||||||||| || || || ||| | | | | ||||| Sbjct 1607171 CTCTCTGGTGGTTGGAAGATGAAGCTCGCTCTGTGCCGTGCCGTCTTCGAGAGCCCCGAT 1607112 Query 279765 GTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTG 279824 | || ||||| || ||||| ||||||||| ||||| || ||||| || ||||| | | Sbjct 1607111 ATTCTCCTGCTCGACGAGCCCACCAACCACTTGGACGTCAAGAACGTCGCATGGCTCGAG 1607052 Query 279825 TCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTC 279884 |||||| | |||| || ||||| |||| ||||| ||||||||| ||||| Sbjct 1607051 AACTACCT--CAAGTCCTCCCCTTG-CACTTCCATCATGGTCTCCCACGACTCTCGCTTC 1606995 Query 279885 CTAGA 279889 || || Sbjct 1606994 CTTGA 1606990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835983512142