Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20capsulatum_20[genbank_20GCA_5F000943775.1_202015-03- 04] 62 sequences; 34,340,580 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq54 140 6e-28 >seq54 Length=3157102 Score = 140 bits (154), Expect = 6e-28 Identities = 296/447 (66%), Gaps = 9/447 (2%) Strand=Plus/Minus Query 25878 GCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCAT 25937 ||| ||||| ||||| |||||||| ||||| ||||| ||| ||||| || || |||| Sbjct 1794065 GCGTCTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCTCTGGTTCCTTCGCCTCCAT 1794006 Query 25938 CTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 ||||||||||||| || || |||||||| || ||| |||||||| ||||| Sbjct 1794005 CTTCTGGCTCAAGAAGCGTGGTCTGATGCCCGGTCTCACCTTCTCCAACGAACTCATTTC 1793946 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 | |||||||||||||||| ||||| || || || |||| | | ||| || ||| Sbjct 1793945 TCGTGACGAGGGTCTCCACACTGATTTCGCTTGTCTCCTCTTCTC---TCACCTGAACCA 1793889 Query 26058 CAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117 | ||| || || ||| | ||||| ||||| || | |||||| |||| Sbjct 1793888 CCGCCCTGATCCCAAGGTCGTTGAAGACATCATTGTCGAGGCCGTTGGTATCGAGCAGGA 1793829 Query 26118 GTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCA 26177 ||| | | ||||||||| || |||||| |||| Sbjct 1793828 GTTCCTCACTGACGCTCTTCCCTGTGGCCTGCTTGGCATGAACGCCAAGCTCATGTGCCA 1793769 Query 26178 ATACATTGAGTATGTGGCCGACCATCTGCT-GTGCCAGCTGGGACTCGCCAGA--CTCTA 26234 ||||| |||| ||| || |||| ||| || ||| | ||| | | ||| ||| Sbjct 1793768 GTACATCGAGTTTGTCGCTGACCGTCTCCTCGTGGCCCTTGGCA---ACAAGAAGTACTA 1793712 Query 26235 CAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTT 26294 || | | ||||| |||||||| ||||| ||| || ||| || ||||||||||| Sbjct 1793711 CAACTCTGCCAACCCCTTCGACTTCATGGAGTCCATCTCCCTGGCTGGCAAGACCAACTT 1793652 Query 26295 CTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||| || ||| | ||||| |||||||| Sbjct 1793651 CTTCGAGAAGCGTGTCGGTGACTATCA 1793625 Score = 89.7 bits (98), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| | |||||||||||||| | ||| ||||||||| || ||||||||||| Sbjct 1794522 ATCTGGCAAATGTACAAGAAGGCCGAGGCCTCTTTCTGGACCGCTGAGGAGATTGATCTA 1794463 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 ||||||| | ||| |||| || | ||| || || ||| || ||| | Sbjct 1794462 TCCAAGGATCTCCACGACTGGCACAACCGCCTCAACGATGATGAGCGTTACTTCATCTCC 1794403 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || ||||| || ||||| || ||| |||| | Sbjct 1794402 CACGTCCTTGCCTTCTTCGCTGCCTCCGACGGTATCGTCAACGAAAACCTGGTCGAGCGT 1794343 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 |||| | | || || ||| ||||| || ||||||||||||||||| Sbjct 1794342 TTCAGCGGAGAGGTCCAGATTCCCGAGGCTCGTTGCTTCTACGGTTTCCAGAT 1794290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844080145280