Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20chrysogenum_20[genbank_20GCA_5F000710275.1_202014-06- 23] 5 sequences; 32,525,541 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1 143 3e-29 seq2 120 4e-22 >seq1 Length=13597520 Score = 143 bits (158), Expect = 3e-29 Identities = 727/1144 (64%), Gaps = 20/1144 (2%) Strand=Plus/Minus Query 62949 GATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 63008 || ||||| || || || || ||||||| || | || | || ||||||||||| Sbjct 2742654 GAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCAATGATCTCAGTGCAC 2742595 Query 63009 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63068 || ||| | ||||| || | || | || |||||||| |||| || |||||| Sbjct 2742594 AGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCCTGTTGCAGGCATCC 2742535 Query 63069 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63128 || || || ||||| || ||||||| || |||| | || | ||| || | ||||| | Sbjct 2742534 TTGTAGAGCATGAAGGGGTTACCAGTCTCGGTCTGGGCCTCGAGAATGGCATACCAGA-G 2742476 Query 63129 ACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--TCGTA--TAGAGTATACA 63183 || ||||||| || | || | | ||||| ||||| | | ||| | Sbjct 2742475 TTTCTGAGCCTTGATGGTC--TTGCGGCCACGGCCCTCTTGCTCGTACTTGGCGTA---A 2742421 Query 63184 ATCGT-TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | | |||||||| || || | |||| ||| | ||| || | || || | Sbjct 2742420 AGGGCATCGAACTCCTCGCCGTAGACATCAGCCAGGCCGGGAGCCTCGTTGGGGCAGAAG 2742361 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 63301 | | ||| || |||| ||| || || ||||||||||| || || |||| ||||| Sbjct 2742360 AGTGTCCAGTCACCGTTGGCCTCAACGCGCTTCATAAAGAGGTCGGGGGTCCACAGAGCG 2742301 Query 63302 TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 || ||| || || | | | | ||||| || || ||||| ||||||||||| Sbjct 2742300 TAGAAA-AGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCTTCCGCAGATCGAGGAA 2742242 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | | ||| | |||||||| |||| ||| || || | | ||||| || ||||| Sbjct 2742241 TTCGAAGACATCGGCGTGCCACGGCTCCAGGTAGATAGCAAAGGCACCAGGGCGCTTGTT 2742182 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 || ||||| || | || | |||||||| ||| | || | || ||| |||| |||||| Sbjct 2742181 ACCACCCTGGTCGACATAGCGTGCGGTGTTGTTAAACACACGCAGCATAGGAACAATACC 2742122 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATT 63539 ||| || || ||||| || || || || | || ||||| | ||| Sbjct 2742121 GTTGGAGGAGCCGTTGGTTCCACCAATGTAAGAACCGGTAGCGCGAATGCGGTGGACATT 2742062 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 ||||| || || || || | || ||||| | || || || | || |||||| Sbjct 2742061 --CAGACCGATACCACCGGCGGTCTTGGAGATCATGGCACAAGTCTTGAGAGTATCATAG 2742004 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 || || || ||||| ||| || |||||| || || || || | | ||| | | Sbjct 2742003 ATACCCTCGATGCTGTCAGCGCTCATGTCAACCAGGAAGCAAGATGCAAGCTGGGGTTGG 2741944 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | ||| | ||||| || | || || |||||||| || || | || | || | | Sbjct 2741943 GGAGTAGCGGCATTGAACAGAGTGGGGGAAGCGTGGGTGAAGTACTTCTGGGACATCAAG 2741884 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 | ||| |||||||| || || || ||| || || || || || |||||||| Sbjct 2741883 TGGTATGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGGATGCCGACAGCAACACGCATC 2741824 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | || |||||| || | ||| ||| || ||| || | | ||| || || Sbjct 2741823 AGCAAGTGCTGGGGGCGCTCAGCAACGGTGCCGTTAATCCGAAGGAGGTATGAACGCTCG 2741764 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 | || || || || || ||||||| ||||| || ||||| | ||| |||| ||| Sbjct 2741763 AGGGTCTTGAATCCGAAGAAGTTGTAGTTGAAGTCACGGTCGTACACAATTGCCGAGTTG 2741704 Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAATAC-TTGAAATAATCGGAGAATG 63958 |||| || || || |||| || | ||| || | | |||| || || |||| | | Sbjct 2741703 AGCTCCTCGGCATGCTTCATAACAATCT-CATAGTGCTCCTTTGAGATCATAGGAGCAGG 2741645 Query 63959 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 64018 || || || || || ||||| | | | | ||| || || | ||| | || Sbjct 2741644 CTTATTGTTCTTGGGGTTCACATAATGGTAGAGATCGGAGATGACCATAGAGAATTGCTT 2741585 Query 64019 ttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGG 64078 |||||||| |||||| || || || | ||| || | || || |||||||| || || || Sbjct 2741584 TTTTGTTTGCTTGTGGAGGTTCGAAACGGCGATACGTGCAGCCAGAATGGCGTAGTCAGG 2741525 Query 64079 ATGT 64082 ||| Sbjct 2741524 GTGT 2741521 >seq2 Length=10455807 Score = 120 bits (132), Expect = 4e-22 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| ||||| || ||| ||||||||||| | | || | ||||| || Sbjct 6508117 AACAGCAGACAAGCGAAGTCAGTGTGGAGACCCTCGTCACGAGAGATCAGCTCGTTGGAG 6508176 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || ||||| || ||||| ||||||||||| || ||||| || |||||||||||||| || Sbjct 6508177 AAAGTGAGACCAGGCATCAGGCCACGCTTCTTCAGCCAGAAGATGGAAGCGAATGAGCCA 6508236 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 || |||||||| || || || || || ||||||| Sbjct 6508237 GAGAAGAAGATACCCTCGACAGCGGCGAAGGCAA 6508270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817560636400