Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20expansum_20[genbank_20GCA_5F000688875.1_202014-04-08] 1,231 sequences; 31,415,732 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1016 275 8e-69 seq940 84.2 3e-11 >seq1016 Length=40071 Score = 275 bits (304), Expect = 8e-69 Identities = 588/872 (67%), Gaps = 15/872 (2%) Strand=Plus/Minus Query 111221 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 111280 ||||| | || ||||||| || |||| ||||| |||||| |||||| | || Sbjct 23094 ACATAAGTGGGGAGGGCGAGGGAAGCCAGGTTGCAGACAGCCACCTCATCAGGGGCACTG 23035 Query 111281 TACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 111340 ||||| | ||| || || || | |||||| || ||| || |||| ||||| |||||| Sbjct 23034 TACTCGACAATCTCAGTGCACAGGTTGGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTA 22975 Query 111341 CTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAT 111400 |||||||||||||| |||||||||||||||||| |||| | || ||||| ||||| | Sbjct 22974 CTCTTCTTGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGAGCC 22915 Query 111401 TTGAGAATAGCCTTCCA-AACATCGGCGGC-TGGTACAATGGCGTTGGCCCGTCCCTCCG 111458 | |||||| || | ||| | | || | | | || || | ||| | | || |||||| Sbjct 22914 TCGAGAATGGCGTACCAGAGCTTCTGAGCCTTGATAGTCTTGCG--GCCACGGCCCTCCT 22857 Query 111459 CCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTG 111518 ||||||||| | |||||| || || ||||| ||||| | || | || || || | Sbjct 22856 GCTCGTACTTCGCGTAGAGAGCGTCGAACTCATCACCGTAGACATCAGCCAGGCCGGGGG 22797 Query 111519 CCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGT 111578 ||| || |||||||| || | ||| | ||| ||||||| ||||||||||| || | Sbjct 22796 CCTCGTTGGGACAGAAGAGTGTCCAGTCACCGTTGGCCTCAACGCGCTTCATGAAGAGAT 22737 Query 111579 CTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGA 111638 | ||| |||||| | | ||||| || | ||| |||| || | ||| ||||| Sbjct 22736 CGGGAGTCCACAAAGCGTAGAAGAGGTCACGGGCACGAACCTCCTCCTTACCGTGGTTCT 22677 Query 111639 GTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAG 111698 || | ||||||||||| | || ||| |||||||| ||||| || |||| || | || Sbjct 22676 TCCGCAGATCAAGGAACTCGAAGACATCGGCGTGCCACGGCTCCAGGTAGATGGCAAAAG 22617 Query 111699 ATCC------CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGC 111752 || ||| | ||| | || | |||||||| || ||| |||||| || | Sbjct 22616 CGCCAGGGCGCTTGTTA---CCACCCTGGTCAACATAGCGGGCGGTGTTGTTAAACACAC 22560 Query 111753 GAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGG 111812 | ||||| |||| |||||| | || || || || || | ||| || | | Sbjct 22559 GCAGCATAGGAACAATACCGTTGGAGGAGCCGTTGGTTCCACCAATGTACGAACCGGTAG 22500 Query 111813 CTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACT 111872 | | | |||| || || || ||||| ||||| ||| ||||| ||||| Sbjct 22499 CGCGAATGCGGTGGACGTTCAGACCGATACCGCCAGCGGTCTTGGAGATCATGGCACAGG 22440 Query 111873 CCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAAC 111932 | | ||||| |||||||||| | || ||| | | | | | ||||||||| Sbjct 22439 TCTTGAGAGTGTCATAGATACCCTCAATGCTGTCTGCGCTCACGTCAACCAGGAAGCAAG 22380 Query 111933 TGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACA 111992 | | ||| || || ||| | |||||||| | || || | |||||| |||| Sbjct 22379 ATGCAAGCTGGGGCTGGGGAGTAGCGGCATTGAACAAAGTGGGGGAGGCGTGAGTGAA-G 22321 Query 111993 TACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 ||| | ||||||||| || ||||||||| | | | |||||||| || ||||| || Sbjct 22320 TACTTCTGGGACATCAAGTGGTATGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATT 22261 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGG 112083 |||| || || ||||||| || || ||| || Sbjct 22260 CCGACGGCAACACGCATGAGCAAGTGCTGAGG 22229 >seq940 Length=59259 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||||||||| || || || || || || || ||||| || || ||||| || || Sbjct 49905 GTGGAGACCCTCGTCACGAGAGATCAGCTCGTTGGAGAAAGTCAGGCCAGGCATCAGGCC 49846 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || | | |||||| || ||||||||||||||||| ||| Sbjct 49845 ACGCTTCTTAAGCCAGAAGATGGAGGCGAATGAGCCAGAGAAGAAGATACCCTCGACAGC 49786 Query 122790 CGCAAACGCAA 122800 || || |||| Sbjct 49785 GGCGAAGGCAA 49775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628022336157600