Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20expansum_20[genbank_20GCA_5F001750045.2_202016-12-07] 257 sequences; 35,046,070 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq142 104 5e-17 seq87 104 5e-17 >seq142 Length=51707 Score = 104 bits (114), Expect = 5e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || || || | ||| || || ||||||||||||||||| Sbjct 45702 ATACCACCACGTAGACGGAGGACAAGGTGAAGTGTGGACTCCTTCTGAATATTATAGTCC 45761 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||| || || || || ||||| || || || | || || || || Sbjct 45762 GAGAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCGGGG 45821 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| ||||| | || || || || | |||||| || | || Sbjct 45822 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATC-TGAGCTCTC 45880 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||||| || || |||||||| ||||| || || || || Sbjct 45881 GACCTCGAGGGTGATAGTCTTTCCAGTTAGGGTCTTAAC 45919 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||||||||| || ||||| | ||||| || || || || ||| Sbjct 45507 GTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTACGTCCGTCCTCCAGCTGCTTACCA 45566 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| | || Sbjct 45567 GCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 45626 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | |||||| || | || ||||| ||||| || ||||| || || | || Sbjct 45627 ACGTTGTCAATGGTATC-TGAGCTCTCGACCTCGAGTGTGATGGTCTTTCCTGTCAAAGT 45685 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 45686 CTTGACAAAGATTTGCAT 45703 >seq87 Length=93243 Score = 104 bits (114), Expect = 5e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | || || || || | ||| || || ||||||||||||||||| Sbjct 6006 ATACCACCACGTAGACGGAGGACAAGGTGAAGTGTGGACTCCTTCTGAATATTATAGTCC 5947 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||||| || || || || ||||| || || || | || || || || Sbjct 5946 GAGAGAGTACGTCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCGGGG 5887 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| ||||| | || || || || | |||||| || | || Sbjct 5886 GGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATC-TGAGCTCTC 5828 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||||| || || |||||||| ||||| || || || || Sbjct 5827 GACCTCGAGGGTGATAGTCTTTCCAGTTAGGGTCTTAAC 5789 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| ||||||||||| || ||||| | ||||| || || || || ||| Sbjct 6201 GTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTACGTCCGTCCTCCAGCTGCTTACCA 6142 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || || || || || || || ||||| ||||| | || Sbjct 6141 GCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 6082 Query 104483 ACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | |||||| || | || ||||| ||||| || ||||| || || | || Sbjct 6081 ACGTTGTCAATGGTATC-TGAGCTCTCGACCTCGAGTGTGATGGTCTTTCCTGTCAAAGT 6023 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 6022 CTTGACAAAGATTTGCAT 6005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394608660956