Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20expansum_20[genbank_20GCA_5F001750045.2_202016-12-07] 257 sequences; 35,046,070 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq142 102 5e-16 seq87 102 5e-16 >seq142 Length=51707 Score = 102 bits (112), Expect = 5e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| |||||||| || || || |||||| || | ||||| Sbjct 45710 ACGTAGACGGAGGACAAGGTGAAGTGTGGACTCCTTCTGAATATTATAGTCCGAGAGAGT 45769 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || ||||| ||||| || ||||||||||| || || || ||||| || Sbjct 45770 ACGTCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCGGGGGGAATGCC 45829 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 |||||||| || ||||| ||||| ||||| ||||| | | | | | || | Sbjct 45830 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCTGAGCTCTCGA-CCTCGA 45888 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 |||| ||||| || || || || |||||||||| Sbjct 45889 GGGTGATAGTCTTTCCAGTTAGGGTCTTAACGA 45921 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||| | || || | ||| ||||| ||||| ||||| || |||||||| || Sbjct 46037 TTATAATCCGAAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGC 46096 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||||||||| || |||||||| || ||||| ||||| || |||||||| Sbjct 46097 TGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCG 46156 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGA 480750 || | |||||||| || ||||| || |||| Sbjct 46157 CTGGACTCAACCTCAAGGGTGATGGTTTTGCCAGTGA 46193 >seq87 Length=93243 Score = 102 bits (112), Expect = 5e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| |||||||| || || || |||||| || | ||||| Sbjct 5998 ACGTAGACGGAGGACAAGGTGAAGTGTGGACTCCTTCTGAATATTATAGTCCGAGAGAGT 5939 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || ||||| ||||| || ||||||||||| || || || ||||| || Sbjct 5938 ACGTCCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGTTGCTGGTCGGGGGGAATGCC 5879 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTG-TGTGAAGTTTCAA 480729 |||||||| || ||||| ||||| ||||| ||||| | | | | | || | Sbjct 5878 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTATCTGAGCTCTCGA-CCTCGA 5820 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 |||| ||||| || || || || |||||||||| Sbjct 5819 GGGTGATAGTCTTTCCAGTTAGGGTCTTAACGA 5787 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 |||||||| | || || | ||| ||||| ||||| ||||| || |||||||| || Sbjct 5671 TTATAATCCGAAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCGAAGATAAGACGCTGC 5612 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||||||||| || |||||||| || ||||| ||||| || |||||||| Sbjct 5611 TGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATAGTATCG 5552 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGA 480750 || | |||||||| || ||||| || |||| Sbjct 5551 CTGGACTCAACCTCAAGGGTGATGGTTTTGCCAGTGA 5515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268168176023036