Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20expansum_20[genbank_20GCA_5F001750045.2_202016-12-07] 257 sequences; 35,046,070 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq142 109 5e-19 seq87 109 5e-19 >seq142 Length=51707 Score = 109 bits (120), Expect = 5e-19 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| || || ||| ||| || || |||||||| || | || || ||| || Sbjct 45489 CGCAACACCAGGTGGAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTACGTCCG 45548 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || || || ||||||||||||||||||| ||| | || ||| ||| Sbjct 45549 TCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTG 45608 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGT 39245 ||| ||| || |||| ||| | | | ||||| ||| ||| || || | || Sbjct 45609 TCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCTGAGCT---CTCGACCTCGAGTGT 45664 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| |||| || || |||||||||||||| Sbjct 45665 GATGGTCTTTCCTGTCAAAGTCTTGACAAAGATTTGCAT 45703 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| ||||| || |||||||| | ||| || || | || ||| Sbjct 46007 ACCAGGTGGAGAGTGGACTCCTTTTGGATGTTATAATCCGAAAGGGTGCGACCATCCTCA 46066 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || ||||||||||||||||| | || | | ||| |||||| | Sbjct 46067 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 46126 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | |||||||| ||||| || || | ||||| |||| Sbjct 46127 ATCTTGGACTTGA-CGTTGTCGATAGTATCGCTGGACTCAACCTCAAGGGTGATGGTTTT 46185 Query 39255 TCCCGT 39260 || || Sbjct 46186 GCCAGT 46191 >seq87 Length=93243 Score = 109 bits (120), Expect = 5e-19 Identities = 158/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || ||||||| || || ||| ||| || || |||||||| || | || || ||| || Sbjct 6219 CGCAACACCAGGTGGAGAGTGGACTCCTTCTGGATATTATAGTCCGAGAGAGTACGTCCG 6160 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || ||||| || || || || ||||||||||||||||||| ||| | || ||| ||| Sbjct 6159 TCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCGGGGGGAATGCCCTCCTTG 6100 Query 39190 TCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCGACTCCACGTCCACCGT 39245 ||| ||| || |||| ||| | | | ||||| ||| ||| || || | || Sbjct 6099 TCCTGGATCTTGGACTTGA-CGTTGTCAATGGTATCTGAGCT---CTCGACCTCGAGTGT 6044 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| | ||||| |||| || || |||||||||||||| Sbjct 6043 GATGGTCTTTCCTGTCAAAGTCTTGACAAAGATTTGCAT 6005 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||| ||||| || |||||||| | ||| || || | || ||| Sbjct 5701 ACCAGGTGGAGAGTGGACTCCTTTTGGATGTTATAATCCGAAAGGGTGCGACCATCCTCA 5642 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| || || ||||||||||||||||| | || | | ||| |||||| | Sbjct 5641 AGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATACCCTCCTTGTCCTGG 5582 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || |||| ||| | | | |||||||| ||||| || || | ||||| |||| Sbjct 5581 ATCTTGGACTTGA-CGTTGTCGATAGTATCGCTGGACTCAACCTCAAGGGTGATGGTTTT 5523 Query 39255 TCCCGT 39260 || || Sbjct 5522 GCCAGT 5517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429544254582641