Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20griseofulvum_20[genbank_20GCA_5F001561935.1_202016-02- 16] 92 sequences; 29,140,916 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq47 132 3e-26 seq51 116 2e-21 seq2 116 2e-21 seq73 109 4e-19 >seq47 Length=1706 Score = 132 bits (146), Expect = 3e-26 Identities = 85/93 (91%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1115 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 1056 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 1055 ATCCATTCATGCGCGTCACTAATTAGATGACGA 1023 >seq51 Length=2183579 Score = 116 bits (128), Expect = 2e-21 Identities = 203/293 (69%), Gaps = 12/293 (4%) Strand=Plus/Minus Query 6201 TTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTA 6258 ||||| |||||||| ||| | | | || | || ||||||||||| ||||| ||||||| Sbjct 1649568 TTCTATCGCTACAAGATG--GAGAAGCTCCAGGCTAAGGTCGAGGGCAAGGGCAACGGTA 1649511 Query 6259 TTAAAACCGTCATTGTCAACATGCCTGAA----GTCGCTAAGGCGCTCGGACGCCCTGCC 6314 | || ||||| ||||||| |||||| || ||| || | ||| | ||||| | Sbjct 1649510 TCAAGACCGTTGTTGTCAA----CCTGAACTCGGTTGCTCAGTCCCTCAGTCGCCCCCCT 1649455 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 |||| | | || || ||||| | |||||||| |||||| | | | | | | Sbjct 1649454 GCCTATCTCATCAAGTACTTCGGTTTTGAACTTGGTGCTCAGGCCAATGCTAAGCCCTCT 1649395 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| || | ||| | ||||| || || || | ||||||| ||||| | || ||| Sbjct 1649394 GACGACCGTTGGATCATCAACGGTTCTCACGACGCCCCCAAGCTCCAGGATTACCTCGAC 1649335 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || |||||||||||| || | | ||| | ||||| |||||||| Sbjct 1649334 GGCTTCATCGCCAAGTTTGTGCTCTGCAAGAAGTGCAAGAACCCTGAGACCGA 1649282 >seq2 Length=1012446 Score = 116 bits (128), Expect = 2e-21 Identities = 87/102 (85%), Gaps = 5/102 (5%) Strand=Plus/Plus Query 25895 TTATAATAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTA 25949 || || ||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1008444 TTCTACTAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGATAGTAGGA 1008503 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||| || || ||||| ||||||||||| |||| Sbjct 1008504 ATCTCGTTAATCTATTTATACGCGTTACTAATTAGATAACGA 1008545 >seq73 Length=6463649 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | || ||||| ||||||||| || ||||||||||| || || ||||| || || Sbjct 2153204 ACCACCACGCAGACGCAGCACCAAATGCAGGGTGCTCTCCTTCTGGATGTTGTAGTCCGA 2153263 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | |||| | || || | || || || || || || || || || || || | ||| Sbjct 2153264 AAGAGTACGTCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGG 2153323 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || || || || ||| || ||||| || | || ||| ||| ||| ||||| Sbjct 2153324 AATTCCCTCCTTATCTTGAATCTTGCTTTTCACGTTGTCGATAGTGTCTGAACTCTCAAC 2153383 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||| ||||| || || |||||||| || || || || ||||| Sbjct 2153384 CTCCAGTGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAGATTTGCAT 2153431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946824440452