Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20italicum_20[genbank_20GCA_5F001008395.1_202015-05-15] 1,186 sequences; 28,597,635 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq876 96.9 4e-15 seq397 96.9 4e-15 >seq876 Length=62397 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||||| || | ||| |||||| ||||| || || |||| ||||| || | Sbjct 14538 ACGCAACACCAGGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGAAAGAGTACGGCC 14597 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||| || |||||||| || | |||||||| || | || | || |||||| Sbjct 14598 GTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGGGATGCCCTCCTT 14657 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || || | | | | |||||| || || || || | |||||| Sbjct 14658 GTCTTGGATCTTGGACTTCACGTTATCGATGGTGTCGGAGGACTCGACCTCAAGCGTGAT 14717 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| || || || ||||| || || || ||||| Sbjct 14718 TGTTTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 14753 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||| ||||||||||| | ||||| || | || || |||||||| || ||||| Sbjct 14791 TCTTTTTGGATATTGTAATCCGAGAGAGTACGGCCATCTTCAAGCTGCTTGCCGGCGAAG 14850 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||| | || | || |||||| ||| ||| || |||| ||| Sbjct 14851 ATAAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGGATCTTGCTCTTGA-CGTT 14909 Query 42138 G-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | | || || |||| || || |||| |||||| || || || ||||| ||||| Sbjct 14910 GTCAATAGTATCTGAGCTC---TCGACTTCGAGCGTGATTGTCTTTCCGGTTAGGGTCTT 14966 Query 42194 TACAAAGATTTGCAT 42208 || || || ||||| Sbjct 14967 GACGAAAATCTGCAT 14981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || || ||||||||||| |||| || || || |||| || |||||||| || ||||| Sbjct 15019 TCTTTCTGAATATTGTAGTCAGAAAGGGTGCGGCCGTCTTCAAGCTGCTTGCCGGCGAAG 15078 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || || ||||||||||||| || | || ||||||||| ||| || || | | Sbjct 15079 ATAAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCTTGGATCTTGGACTTCACATTG 15138 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||| || || |||| || ||||| || || || || ||||| || Sbjct 15139 TCGATGGTGTCGGACGACTCGACCTCGAGGGTAATGGTCTTTCCGGTCAGGGTCTTAAC 15197 >seq397 Length=203225 Score = 96.9 bits (106), Expect = 4e-15 Identities = 132/182 (73%), Gaps = 2/182 (1%) Strand=Plus/Plus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || ||| || || | || || |||||||| || ||||| | Sbjct 148995 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 149054 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | || ||||||||||| | || | || |||||| ||| ||| || |||| ||| | Sbjct 149055 TCAGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGTCTTGA-CGTTG 149113 Query 42139 -CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | ||||||||||| || ||||||| || ||||| || ||||| || ||||| || Sbjct 149114 TCGATGGTGTCGCTCGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 149173 Query 42198 AA 42199 || Sbjct 149174 AA 149175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543204746870240