Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20italicum_20[genbank_20GCA_5F001008395.1_202015-05-15] 1,186 sequences; 28,597,635 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq876 149 1e-30 seq376 98.7 2e-15 seq397 89.7 1e-12 >seq876 Length=62397 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| || || ||||||||||||| ||||||||| | | ||| | |||||| Sbjct 14770 AGGACAAGGTGAAGTGTAGATTCTTTTTGGATATTGTAATCCGAGAGAGTACGGCCATCT 14829 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| || || ||||| || ||||| || ||||| || Sbjct 14830 TCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCC 14889 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || || || || |||||| | || || || | |||||| ||| Sbjct 14890 TGGATCTTGCTCTTGACGTTGTCAATAGTATCTGAGCTCTCGACTTCGAGCGTGATTGTC 14949 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | || || | ||| | ||||| Sbjct 14950 TTTCCGGTTAGGGTCTTGACGAAAATCTGCAT 14981 Score = 149 bits (164), Expect = 1e-30 Identities = 147/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||||||||| || |||||||| || | |||||| || | | || | || ||| Sbjct 14998 AGGACAAGGTGGAGTGTCGATTCTTTCTGAATATTGTAGTCAGAAAGGGTGCGGCCGTCT 15057 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| || || |||||||| ||||| || ||||||||| Sbjct 15058 TCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGGTCGGGAGGAATGCCCTCCTTGTCT 15117 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || | || || || | || || ||| Sbjct 15118 TGGATCTTGGACTTCACATTGTCGATGGTGTCGGACGACTCGACCTCGAGGGTAATGGTC 15177 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 15178 TTTCCGGTCA 15187 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | || || |||||||||||||| || || || | || || || | | ||| Sbjct 14532 ACGCAGACGCAACACCAGGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCAGAAAGAGT 14591 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || ||||| || ||||||||||| | || || || || || || || || Sbjct 14592 ACGGCCGTCCTCAAGCTGTTTGCCAGCGAAGATCAAGCGCTGCTGATCAGGAGGGATGCC 14651 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| |||||| ||||||||||| |||| || || || | Sbjct 14652 CTCCTTGTCTTGGATCTTGGACTTCACGTTATCGATGGTGTCGGAGGACTCGACCTCAAG 14711 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||| || || || |||| || || | ||| | ||||| Sbjct 14712 CGTGATTGTTTTTCCGGTCAGGGTCTTGACGAAAATCTGCAT 14753 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| |||||||||||||| ||||| |||| ||| || || | | || | || || Sbjct 15285 AGGACCAGGTGGAGAGTGGACTCTTTCTGGATATTATAGTCCGAAAGCGTGCGACCGTCC 15344 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||||||||| | ||| || || || || || || || |||||||| Sbjct 15345 TCAAGCTGTTTGCCAGCGAAGATCAATCGCTGCTGATCAGGAGGGATCCCCTCCTTGTCC 15404 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| || ||||| || || || || || || | ||||| ||| Sbjct 15405 TGGATCTTCGACTTTACGTTGTCGATAGTATCACTGGACTCAACCTCAAGGGTGATGGTC 15464 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 15465 TTGCCAGT 15472 >seq376 Length=2626 Score = 98.7 bits (108), Expect = 2e-15 Identities = 200/293 (68%), Gaps = 7/293 (2%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||||||||| |||| ||||||||| | | || || ||||| | | Sbjct 270 ACTTTATATTTAATGTTTGCATTATTTTCTGGTTTAGTTGGAACAGCGTTTTCAGTTTTA 329 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATAT-TGAGTGGTAATAGCCAACTTT 7558 || || ||||| ||| | | ||| ||| |||| |||| | || ||| || | | Sbjct 330 ATTAGATTAGAGTTATCAGGTCCAGGTGTTCAATATATATCAGAC--AAT---CAGTTAT 384 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||| || || |||||||| | | ||||||||||| | |||||||| | Sbjct 385 ATAATAGTATAATAACAGCGCATGCTATCTTGATGATTTTCTTCATGGTTATGCCTGCAT 444 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | || || ||||| || |||| || | || ||| | |||| | ||| |||||||| | Sbjct 445 TAATTGGAGGTTTTGGTAATTTCTTATTACCATTATTAGTTGGGGGTCCAGATATGGCAT 504 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCTA 7731 |||| || | || |||||||||||||||||| || ||| |||||| || Sbjct 505 TTCCTAGATTAAATAATATAAGTTTTTGATTATTAGTTCCTAGTTTATTTTTA 557 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/104 (79%), Gaps = 4/104 (4%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTG--ATAAAGGATAGGATCGCCTCCGCCT 370729 ||||||||| ||||| ||||||||||||||||| ||||| ||||| || || || || Sbjct 950 TTCAGGATGTCCAAAGAATCAGAATAAATGTTGGAATAAA--ATAGGGTCACCACCACCA 893 Query 370730 GATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | | ||||| || |||||||| |||||||||||||| || Sbjct 892 GCTACTTCAAAGAATGATGTATTAAAGTTTCTATCAGTTAATAC 849 >seq397 Length=203225 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| || || | ||||| || |||||||| || |||||||| Sbjct 148997 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 149056 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || ||||| || ||||| || ||||| || |||||||| ||| || ||| Sbjct 149057 AGGCGCTGCTGGTCAGGGGGAATGCCCTCCTTATCCTGGATCTTGGTCTTGACGTTGTCG 149116 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| | || || || | || || ||||| ||||||| || || | ||| Sbjct 149117 ATGGTGTCGCTCGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 149175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192513078743084