Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F000737485.2_202015-06- 08] 428 sequences; 27,933,364 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq198 165 1e-35 seq67 107 2e-18 >seq198 Length=8267 Score = 165 bits (182), Expect = 1e-35 Identities = 729/1143 (64%), Gaps = 16/1143 (1%) Strand=Plus/Minus Query 53710 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 53769 ||| ||||| || ||||| || ||||||| || | || | || ||||||||||| Sbjct 5346 AGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCGATAATCTCAGTGCA 5287 Query 53770 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 53829 || ||| | || || || | || | || |||||||| ||||| || ||||| Sbjct 5286 CAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCTTGTTGCAAGCATC 5227 Query 53830 CTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTCCAGAC 53889 ||| || || ||||| || ||||||| ||| |||||| || | ||| || | ||||| Sbjct 5226 CTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAGAG 5167 Query 53890 GACACGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTT--TCGTA--TAGTGTATACA 53945 ||||||| || | || | | ||| | ||||| | | ||| | | Sbjct 5166 CTTCTGAGCCTTGATGGTC--TTGCGGCCACGGCCCTCCTGCTCGTACTTGGCGTAGAGA 5109 Query 53946 ATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCA 54005 | || ||||| || || | |||| | | ||||| |||| || || | | Sbjct 5108 GCC--TCGAACTCATCACCGTAGACATCAGCTAGGCCAGGGGCCTCATTGGGGCAGAAGA 5051 Query 54006 ACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-T 54064 || ||| || |||| ||| || || ||||| |||||||| || |||| ||||| | Sbjct 5050 GCGTCCAGTCACCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGGTCCACAGAGCGT 4991 Query 54065 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 54124 | ||| || || | | | | ||||| || || |||||| |||||||||||| Sbjct 4990 AGAAA-AGGTCACGAGCGCGAACCTCCTCCTTACCGTGATTCTTGCGCAGATCGAGGAAC 4932 Query 54125 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTT 54184 | | | ||| | |||||||| |||| ||| |||| | | || || || ||||| Sbjct 4931 TCGAAGACATCGGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTA 4872 Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 || ||||| || | || | |||||||| ||| | || | || ||| |||| |||||| Sbjct 4871 CCACCCTGGTCCACATAACGTGCGGTGTTGTTAAACACACGCAGCATAGGAACAATACCG 4812 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 54302 ||||| | || ||||| || | || || || | || ||||| | |||| Sbjct 4811 TTGGAGGAGCCGTTGGTTCCAGCAATGTAAGAACCGGTAGCGCGAATGCGGTGGACATTG 4752 Query 54303 ATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 54362 ||||| || || || || | || ||||| | || || || | |||||||| | Sbjct 4751 --AGACCGATACCACCAGCGGTCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAA 4694 Query 54363 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 54422 | ||||| || || || | ||| || || || || || | | ||| | | Sbjct 4693 TACCCTCAATGCTGTCTGCGCTCACGTCAACCAGGAAGCAAGATGCGAGCTGGGGTTGGG 4634 Query 54423 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 54482 ||| | ||||| || | || || || ||||| || || | |||| || | | | Sbjct 4633 GAGTAGCGGCATTGAACAGAGTGGGGGAGGCGTGAGTGAAGTACTTTTGGGACATCAAGT 4574 Query 54483 TGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 54542 ||| ||||| || || || || ||| |||||||| || || |||||||| | Sbjct 4573 GGTATGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATTCCGACAGCAACACGCATCA 4514 Query 54543 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCA 54602 || ||||||||| | ||| | | ||| ||| || || | ||| || || | Sbjct 4513 GCAAGTGCTGAGGACGCTCAGCAACATTGCCGTTAATCCGAAGAAGGTATGACCGCTCGA 4454 Query 54603 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGAGTTGA 54662 || ||||| || || |||||||| ||||| || ||||| | |||| | ||||||| Sbjct 4453 GGGTCTTAAATCCGAAGTAGTTGTAGTTGAAGTCACGGTCGTACACAATAGCCGAGTTGA 4394 Query 54663 GTTTATCCTTATATTTGTTAACTACATCCATGGTAAT-ACTTGAAATAATCGGAGAATGT 54721 | | || || || |||| | | | | || | | ||| || || |||| | Sbjct 4393 GCTCCTCGGCATGCTTCATAACGATCT-CGTAGTGTTCATCTGAGATCATAGGAGCGGGC 4335 Query 54722 TTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATCACTTCACTAAATAGtttt 54781 || ||||| || |||||||| | | | ||| || || ||| | ||| Sbjct 4334 TTATTGTTTTTGGGGTTGACATAATGGTAGAGATCGGAGATGACCATGGAGAATTGCTTT 4275 Query 54782 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 54841 ||||||| ||||| || || || ||||| || | || || |||||||| || || || Sbjct 4274 TTTGTTTGCTTGTGGAGGTTGGAAACGGCGATACGTGCAGCCAGAATGGCGTAGTCGGGG 4215 Query 54842 TGT 54844 ||| Sbjct 4214 TGT 4212 >seq67 Length=141994 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 24126 AACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAA 24185 |||| || ||| || || || ||| |||||||| || | || || |||||||| Sbjct 89920 AACAGCAGACAAGCAAAGTCAGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAG 89979 Query 24186 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCA 24245 || ||||| || ||||||||||||||||| || ||||| || ||||| || ||||| || Sbjct 89980 AAAGTGAGACCAGGCATTAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAATGAGCCG 90039 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 || ||||| || || || || || || ||||||| Sbjct 90040 GAGAAGAAGATACCCTCCACAGCGGCGAAGGCAA 90073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593718423589440