Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F000737485.2_202015-06- 08] 428 sequences; 27,933,364 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq198 181 1e-40 seq67 116 5e-21 >seq198 Length=8267 Score = 181 bits (200), Expect = 1e-40 Identities = 735/1144 (64%), Gaps = 18/1144 (2%) Strand=Plus/Minus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| ||||| || || || || ||||||| || | || | || ||||||||||| Sbjct 5346 AGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGCACTGTACTCGATAATCTCAGTGCA 5287 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 || ||| | ||||| || | || | || |||||||| ||||| || ||||| Sbjct 5286 CAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCTTGTTGCAAGCATC 5227 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || ||||| || ||||||| ||| |||| | || | ||| || | ||||| Sbjct 5226 CTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCGAGAATGGCGTACCAGA- 5168 Query 63128 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT--TCGTA--TAGAGTATAC 63182 | || ||||||| || | || | | ||| | ||||| | | ||| | Sbjct 5167 GCTTCTGAGCCTTGATGGTC--TTGCGGCCACGGCCCTCCTGCTCGTACTTGGCGTAGAG 5110 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | | |||||||| || || | |||| | | | ||| |||| || || | Sbjct 5109 AGCC--TCGAACTCATCACCGTAGACATCAGCTAGGCCAGGGGCCTCATTGGGGCAGAAG 5052 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 63301 | || ||| || |||| ||| || || ||||| |||||||| || |||| ||||| Sbjct 5051 AGCGTCCAGTCACCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGGTCCACAGAGCG 4992 Query 63302 TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 || ||| || || | | | | ||||| || || |||||| ||||||||||| Sbjct 4991 TAGAAA-AGGTCACGAGCGCGAACCTCCTCCTTACCGTGATTCTTGCGCAGATCGAGGAA 4933 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | | | ||| | |||||||| |||| ||| ||||| | | || || || ||||| Sbjct 4932 CTCGAAGACATCGGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGGGCGCTTGTT 4873 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 || ||||| || | || | |||||||| ||| | || | || ||| |||| |||||| Sbjct 4872 ACCACCCTGGTCCACATAACGTGCGGTGTTGTTAAACACACGCAGCATAGGAACAATACC 4813 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATT 63539 ||| || || ||||| || | || || || | || ||||| | ||| Sbjct 4812 GTTGGAGGAGCCGTTGGTTCCAGCAATGTAAGAACCGGTAGCGCGAATGCGGTGGACATT 4753 Query 63540 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAG 63599 | ||||| || || || || | || ||||| | || || || | || ||||| Sbjct 4752 G--AGACCGATACCACCAGCGGTCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAA 4695 Query 63600 ATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 || || || ||||| || || ||| || || || || || | | ||| | | Sbjct 4694 ATACCCTCAATGCTGTCTGCGCTCACGTCAACCAGGAAGCAAGATGCGAGCTGGGGTTGG 4635 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | ||| | ||||| || | || || || ||||| || || | |||| || | | Sbjct 4634 GGAGTAGCGGCATTGAACAGAGTGGGGGAGGCGTGAGTGAAGTACTTTTGGGACATCAAG 4575 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63779 | ||| |||||||| || || || ||| |||||||| || || |||||||| Sbjct 4574 TGGTATGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATTCCGACAGCAACACGCATC 4515 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 | || ||||||||| | ||| ||| ||| ||| || | | ||| || || Sbjct 4514 AGCAAGTGCTGAGGACGCTCAGCAACATTGCCGTTAATCCGAAGAAGGTATGACCGCTCG 4455 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTG 63899 | || ||||| || || |||||||| ||||| || ||||| | |||| |||| ||| Sbjct 4454 AGGGTCTTAAATCCGAAGTAGTTGTAGTTGAAGTCACGGTCGTACACAATAGCCGAGTTG 4395 Query 63900 AGCTTATCCTTATATTTGTTAACTATATCCATGGTAAT-ACTTGAAATAATCGGAGAATG 63958 |||| || || || |||| || | | | || | | ||| || || |||| | Sbjct 4394 AGCTCCTCGGCATGCTTCATAACGATCT-CGTAGTGTTCATCTGAGATCATAGGAGCGGG 4336 Query 63959 TTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttt 64018 || ||||| || || ||||| | | | | ||| || || ||| | || Sbjct 4335 CTTATTGTTTTTGGGGTTGACATAATGGTAGAGATCGGAGATGACCATGGAGAATTGCTT 4276 Query 64019 ttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCGG 64078 |||||||| |||||| || || || | ||| || | || || |||||||| || || || Sbjct 4275 TTTTGTTTGCTTGTGGAGGTTGGAAACGGCGATACGTGCAGCCAGAATGGCGTAGTCGGG 4216 Query 64079 ATGT 64082 ||| Sbjct 4215 GTGT 4212 >seq67 Length=141994 Score = 116 bits (128), Expect = 5e-21 Identities = 118/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || ||| || || || ||| |||||||| || | || || ||||| || Sbjct 89920 AACAGCAGACAAGCAAAGTCAGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAG 89979 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || ||||| || ||||||||||||||||| || ||||| || ||||| |||||||| ||| Sbjct 89980 AAAGTGAGACCAGGCATTAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAATGAGCCG 90039 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 || |||||||| || || || || || ||||||| Sbjct 90040 GAGAAGAAGATACCCTCCACAGCGGCGAAGGCAA 90073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814230475840