Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F000737485.2_202015-06- 08] 428 sequences; 27,933,364 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq198 181 1e-40 seq67 111 2e-19 >seq198 Length=8267 Score = 181 bits (200), Expect = 1e-40 Identities = 741/1153 (64%), Gaps = 24/1153 (2%) Strand=Plus/Minus Query 71697 GGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCA---TATTGTATAAT 71753 ||| | ||| ||||| || ||||| || ||||||| || |||| || | ||||| Sbjct 5352 GGCGAGAGAAGCCAGGTTGCAAACAGCCACCTCATCAGG---GGCACTGTACTCGATAAT 5296 Query 71754 TTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 71813 |||||||| || ||| | || || || | || | || |||||||| ||||| Sbjct 5295 CTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTTACTCTTCTTGTT 5236 Query 71814 ACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 71873 || |||||||| || || || || || ||||||| ||| |||| | || | ||| || Sbjct 5235 GCAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGCCTCGAGAATGGC 5176 Query 71874 TTTCCAGACGACTC-GAGCCTTTATTATATTCTTGTATCTCTTTTCTCTT--TCGTATT- 71929 | ||||| | || ||||||| || | || | | | ||| | ||||| | Sbjct 5175 GTACCAGA-GCTTCTGAGCCTTGATGGTCTTGCGGC--CACGGCCCTCCTGCTCGTACTT 5119 Query 71930 -GTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTC 71988 | ||| | | | |||||||| || || | ||| ||| ||||| ||||| Sbjct 5118 GGCGTAGAGAGCC--TCGAACTCATCACCGTAGACATCAGCTAGGCCAGGGGCCTCATTG 5061 Query 71989 GGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATC 72048 || || | | | ||| || || | | | || || ||||| |||||||| || || Sbjct 5060 GGGCAGAAGAGCGTCCAGTCACCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGGGTC 5001 Query 72049 CAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 72107 || ||||| || ||| || || | | | | |||||| || || |||||| || Sbjct 5000 CACAGAGCGTAGAAA-AGGTCACGAGCGCGAACCTCCTCCTTACCGTGATTCTTGCGCAG 4942 Query 72108 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 72167 |||||||||| | | | ||| | |||||||| |||| ||| ||||| | | || || Sbjct 4941 ATCGAGGAACTCGAAGACATCGGCGTGCCACGGCTCCAGGTAGATGGCAAAGGCACCGGG 4882 Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || ||||| || ||||| || | || | |||||||| ||| | || | || ||| || Sbjct 4881 GCGCTTGTTACCACCCTGGTCCACATAACGTGCGGTGTTGTTAAACACACGCAGCATAGG 4822 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--A 72285 || |||||| ||||| | || ||||| || | || || || | || ||||| Sbjct 4821 AACAATACCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAAGAACCGGTAGCGCGAATGCG 4762 Query 72286 TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 72345 || |||| ||||| || || || || | || ||||| | || || || | Sbjct 4761 GTGGACATTG--AGACCGATACCACCAGCGGTCTTGGAGATCATGGCACAGGTCTTGAGA 4704 Query 72346 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 72405 |||||||| || ||||| || || || | ||| || || || || || | | Sbjct 4703 GTATCATAAATACCCTCAATGCTGTCTGCGCTCACGTCAACCAGGAAGCAAGATGCGAGC 4644 Query 72406 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 72465 ||| | | ||| | ||||| || | || || || ||||| || || | |||| Sbjct 4643 TGGGGTTGGGGAGTAGCGGCATTGAACAGAGTGGGGGAGGCGTGAGTGAAGTACTTTTGG 4584 Query 72466 GACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCG 72525 |||| | | ||| |||||||| || || || ||| || ||||| || || Sbjct 4583 GACATCAAGTGGTATGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATTCCGACAGCA 4524 Query 72526 ACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAG 72585 |||||||| | || |||||||| | ||| | | ||| || || | | ||| Sbjct 4523 ACACGCATCAGCAAGTGCTGAGGACGCTCAGCAACATTGCCGTTAATCCGAAGAAGGTAT 4464 Query 72586 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATA 72645 || || | || ||||| || || |||||||| ||||| || ||||| | |||| Sbjct 4463 GACCGCTCGAGGGTCTTAAATCCGAAGTAGTTGTAGTTGAAGTCACGGTCGTACACAATA 4404 Query 72646 ACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGAT-ACTTGAAATAAT 72704 |||| ||||| | || || || |||| || | | | ||| | | ||| || || Sbjct 4403 GCCGAGTTGAGCTCCTCGGCATGCTTCATAACGATCT-CGTAGTGTTCATCTGAGATCAT 4345 Query 72705 CGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACT 72764 |||| | || ||||| || || ||||| | | | | ||| || || Sbjct 4344 AGGAGCGGGCTTATTGTTTTTGGGGTTGACATAATGGTAGAGATCGGAGATGACCATGGA 4285 Query 72765 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 72824 ||| | |||||||||| |||||| || || || ||||| || | || || |||||||| Sbjct 4284 GAATTGCTTTTTTGTTTGCTTGTGGAGGTTGGAAACGGCGATACGTGCAGCCAGAATGGC 4225 Query 72825 ATAATCTGGATGT 72837 || || || ||| Sbjct 4224 GTAGTCGGGGTGT 4212 >seq67 Length=141994 Score = 111 bits (122), Expect = 2e-19 Identities = 117/154 (76%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 42056 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAA 42115 |||| || ||| || || || ||| ||||||||||| | || || |||||||| Sbjct 89920 AACAGCAGACAAGCAAAGTCAGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAG 89979 Query 42116 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCA 42175 || ||||| || ||||||||||||||||| || ||||| || || || || ||||| || Sbjct 89980 AAAGTGAGACCAGGCATTAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAATGAGCCG 90039 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209 || |||||||| || || || || || ||||||| Sbjct 90040 GAGAAGAAGATACCCTCCACAGCGGCGAAGGCAA 90073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135609405280