Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F000737485.2_202015-06- 08] 428 sequences; 27,933,364 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq197 132 3e-26 seq34 116 2e-21 seq12 95.1 8e-15 >seq197 Length=8402 Score = 132 bits (146), Expect = 3e-26 Identities = 85/93 (91%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958 |||||||||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 1155 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 1214 Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 1215 ATCCATTCATGCGCGTCACTAATTAGATGACGA 1247 >seq34 Length=237077 Score = 116 bits (128), Expect = 2e-21 Identities = 205/297 (69%), Gaps = 4/297 (1%) Strand=Plus/Minus Query 6193 CGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGG 6250 |||| | ||||| |||||||| ||| | | || | || || |||||||| ||||| Sbjct 210135 CGGATCCCTTCTATCGCTACAAGATG--GAAAAGCTCCAGGCTAAAGTCGAGGGCAAGGG 210078 Query 6251 AAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCC 6310 ||||||||||| ||||| | |||||| || ||||| || | ||| | || || Sbjct 210077 CAACGGTATTAAGACCGTTGTCGTCAACTTGAACTCGGTCGCCCAGTCTCTCAGTCGGCC 210018 Query 6311 TGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA 6370 | | |||| | | || || ||||||| |||||||| || ||| | | | | | Sbjct 210017 TCCTGCCTATCTCATCAAGTACTTCGGGTTTGAACTTGGTGCCCAGGCCAACGCTAAGCC 209958 Query 6371 CAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACT 6430 | ||||||| | ||| | ||||| || || | | ||||||| ||||||| || Sbjct 209957 CTCCGACGAGCGTTGGATCATCAACGGTTCTCACGATGCCCCCAAGCTCCAGGACTACCT 209898 Query 6431 TGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||||||| || |||||||||||| || | | ||| | ||||| |||||||| Sbjct 209897 TGACGGCTTCATCTCCAAGTTTGTGCTATGCAAGAAGTGCAAGAACCCTGAGACCGA 209841 >seq12 Length=470192 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||||||||| || |||||||||||||| || || ||||| || || Sbjct 270744 CCACCACGCAGACGCAACACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 270803 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | || || || || || || || || || || || | || Sbjct 270804 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGAGGA 270863 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||| || ||| || || | || || ||| || || || Sbjct 270864 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 270923 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||| ||||| || || ||||| || || || || || ||||| Sbjct 270924 TCTAGTGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 270970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334945452831668