Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penicillium_20roqueforti_20[genbank_20GCA_5F000737485.2_202015-06-
08] 428 sequences; 27,933,364 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq197 132 3e-26
seq34 116 2e-21
seq12 95.1 8e-15
>seq197
Length=8402
Score = 132 bits (146), Expect = 3e-26
Identities = 85/93 (91%), Gaps = 5/93 (5%)
Strand=Plus/Plus
Query 25904 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTA 25958
|||||||||| ||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1155 GCCCGTTCCCCTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 1214
Query 25959 ATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||| ||||||||||||||||||||||||||||
Sbjct 1215 ATCCATTCATGCGCGTCACTAATTAGATGACGA 1247
>seq34
Length=237077
Score = 116 bits (128), Expect = 2e-21
Identities = 205/297 (69%), Gaps = 4/297 (1%)
Strand=Plus/Minus
Query 6193 CGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGG 6250
|||| | ||||| |||||||| ||| | | || | || || |||||||| |||||
Sbjct 210135 CGGATCCCTTCTATCGCTACAAGATG--GAAAAGCTCCAGGCTAAAGTCGAGGGCAAGGG 210078
Query 6251 AAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCC 6310
||||||||||| ||||| | |||||| || ||||| || | ||| | || ||
Sbjct 210077 CAACGGTATTAAGACCGTTGTCGTCAACTTGAACTCGGTCGCCCAGTCTCTCAGTCGGCC 210018
Query 6311 TGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA 6370
| | |||| | | || || ||||||| |||||||| || ||| | | | | |
Sbjct 210017 TCCTGCCTATCTCATCAAGTACTTCGGGTTTGAACTTGGTGCCCAGGCCAACGCTAAGCC 209958
Query 6371 CAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACT 6430
| ||||||| | ||| | ||||| || || | | ||||||| ||||||| ||
Sbjct 209957 CTCCGACGAGCGTTGGATCATCAACGGTTCTCACGATGCCCCCAAGCTCCAGGACTACCT 209898
Query 6431 TGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||||||| || |||||||||||| || | | ||| | ||||| ||||||||
Sbjct 209897 TGACGGCTTCATCTCCAAGTTTGTGCTATGCAAGAAGTGCAAGAACCCTGAGACCGA 209841
>seq12
Length=470192
Score = 95.1 bits (104), Expect = 8e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || ||||||||||| || |||||||||||||| || || ||||| || ||
Sbjct 270744 CCACCACGCAGACGCAACACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 270803
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | ||| | || || | || || || || || || || || || || || | ||
Sbjct 270804 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGAGGA 270863
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| || || |||||| ||| || ||| || || | || || ||| || || ||
Sbjct 270864 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 270923
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| ||| ||||| || || ||||| || || || || || |||||
Sbjct 270924 TCTAGTGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 270970
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334945452831668
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |