Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F000737485.2_202015-06- 08] 428 sequences; 27,933,364 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq198 248 1e-60 seq16 127 2e-24 >seq198 Length=8267 Score = 248 bits (274), Expect = 1e-60 Identities = 481/702 (69%), Gaps = 10/702 (1%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||| ||| |||| ||| |||||||||||| || |||||| | || || |||||||| Sbjct 4563 TGAGACATACCACTTGATGTCCCAAAAGTACTTCACTCACGCCTCCCCCACTCTGTTCAA 4622 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 || | ||| || || ||| | | ||||||||||| | ||| | ||| Sbjct 4623 TGCCGCTACTCCCCAACCCCAGCTCGCATCTTGCTTCCTGGTTGACGTGAGCGCAGACAG 4682 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 || || || || || || || |||||| |||||| ||||||||| | ||||| Sbjct 4683 CATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAAGACCGCTGGTGG 4742 Query 53422 TATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAAC 53479 ||||||| || | || || | || | || || | ||| | || || || ||| Sbjct 4743 TATCGGTCTCAA-TG-TCCACCGCATTCGCGCTACCGGTTCTTACATTGCTGGAACCAAC 4800 Query 53480 GGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTC 53539 ||| | || | || || || |||||||| || || || |||||||| || || || || Sbjct 4801 GGCTCCTCCAACGGTATTGTTCCTATGCTGCGTGTGTTTAACAACACCGCACGTTATGTG 4860 Query 53540 AACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCC 53599 ||||||||||| |||||| || | || ||||||||||| ||||||||||||||| Sbjct 4861 GACCAGGGTGGTAACAAGCGCCCCGGTGCCTTTGCCATCTACCTGGAGCCGTGGCACGCC 4920 Query 53600 GACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGT 53659 || | | ||||| ||||| ||||| |||||| ||| | || ||| | ||| ||| Sbjct 4921 GATGTCTTCGAGTTCCTCGATCTGCGCAAGAATCACGGTAAGGAGGAGGTTCGCGCTCGT 4980 Query 53660 GACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGA 53718 ||||| || ||| |||||||||| || || ||||||||| | || ||| ||| Sbjct 4981 GACCTTTTCTAC-GCTCTGTGGACCCCCGATCTCTTCATGAAGCGCGTCGAGGCCAACGG 5039 Query 53719 GGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGA 53778 || ||| || | ||||| || ||| ||| ||||| | |||||||||||| || Sbjct 5040 TGACTGGACGCTCTTCTGCCCCAATGAGGCCCCTGGCCTAGCTGATGTCTACGGTGATGA 5099 Query 53779 GTTTAACGAGATGTATCGGACGTAC--GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAG 53836 ||| | | | || | |||| |||| ||||||| | |||| ||||| Sbjct 5100 GTTCGAGGCTCTCTACGCCAAGTACGAGCAG--GAGGGCCGTGGCCGCAAGACCATCAAG 5157 Query 53837 GCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATG 53896 || | || | ||| | || || ||| || |||| ||||| || | || | |||| Sbjct 5158 GCTCAGAAGCTCTGGTACGCCATTCTCGAGGCCCAGACTGAGACTGGTAACCCCTTCATG 5217 Query 53897 TGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||||||||| | |||| ||||||| |||||||||||| Sbjct 5218 CTCTACAAGGATGCTTGCAACAAGAAGAGTAACCAGAAGAAC 5259 >seq16 Length=418198 Score = 127 bits (140), Expect = 2e-24 Identities = 301/450 (67%), Gaps = 20/450 (4%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 |||||||| ||||| || || || || |||| ||||||||| ||||| || || ||| | Sbjct 299651 CCAGTTCCAATACCATCCGCGCCGTTGATCAAAATCATCGGGACGACGGGCACAAAGACC 299710 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGG- 117270 || ||||| | || | || || || | ||| | || | || || |||| Sbjct 299711 TCGGGCTCGATCTTCTTGCCATCATCTTCGTTGTAAGTTAGTA----ATGGTTCATCGGC 299766 Query 117271 ---ATCGAATATGTTCTTG-GTCCAC--GGTGCTAGGCGAGTGAAAATGTAACGAGAGCT 117324 || ||| | |||| || || || | |||||||||| | |||||||||| || Sbjct 299767 CATATGGAAGAC---CTTGCGTGCAAAGGGAGATAGGCGAGTGTAGATGTAACGAGCACT 299823 Query 117325 TGCAGCATCCTTGCCACCAGC---AAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAG 117381 ||| ||| ||||||| | ||| || |||| || | |||||| ||||||| | Sbjct 299824 GGCACAATC---GCCACCACCTTGAAGTCGACTACCAAAGTTTCCACTAGGCTCCAGGCA 299880 Query 117382 GTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCT 117441 ||| | ||||||| ||| |||||| | ||||| | | || || || || ||| Sbjct 299881 GTTGATATTGTTGGAGCCAACAAAGGTCTGAGCAAGGCCAACGATAGTCTGCTGAAGGGA 299940 Query 117442 CGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTT 117501 | ||||| ||||| || || ||| | | || | ||| ||||||| | | ||||| Sbjct 299941 GACGTCACCGTGGTGGTAGGCTGTCATTCCGGATACATGGCCTGCCAGCTCAACTACCTT 300000 Query 117502 CATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTT 117561 |||||| | ||| ||| || |||| | || |||||||||||||| ||||| Sbjct 300001 CATGTCCTTCTTCAAGTTGCGACGGAAACAGGTGTGAAGCACCTTGCGCTGACCGGGCTT 300060 Query 117562 CAGACCATCCGCCACGTGAGGGATCGAACG 117591 || ||||| | ||| ||| ||||| || Sbjct 300061 CAATCCATCGACAACGGAAGGAATCGAGCG 300090 Score = 89.7 bits (98), Expect = 6e-13 Identities = 197/292 (67%), Gaps = 4/292 (1%) Strand=Plus/Plus Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085 || ||| ||||||| || | ||||| ||| |||||| || || | ||||| Sbjct 299801 CGAGTGTAGATGTAACGAGCACTGGCACAATCGCCACCACCTTGAAGTCGACTACCAAAG 299860 Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145 | |||| ||||| ||| ||||| ||||||| ||| || || ||||||| | Sbjct 299861 TTTCCACTAGGCTCCAGGCAGTTGATATTGTTGGAGCCAACAAAGGTCTGAGCAAGGCCA 299920 Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 || || || ||| || | ||||||||||| || || ||| |||| ||| || Sbjct 299921 ACGATAGTCTGCTGAAGGGAGACGTCACCGTGGTGGTAGGCTGTCAT-TCCG-GATACAT 299978 Query 152206 --CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAA 152263 || |||| || | |||||||||||| || ||| ||| || ||||| || || Sbjct 299979 GGCCTGCCAGCTCAACTACCTTCATGTCCTTCTTCAAGTTGCGACGGAAACAGGTGTGAA 300038 Query 152264 TCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACG 152315 |||||||||||| || ||||| || || || ||| ||||||||| || Sbjct 300039 GCACCTTGCGCTGACCGGGCTTCAATCCATCGACAACGGAAGGAATCGAGCG 300090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547213072394400