Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03- 01] 16 sequences; 27,123,058 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2 102 8e-17 seq3 82.4 8e-11 >seq2 Length=5360957 Score = 102 bits (112), Expect = 8e-17 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCC-GTGGCATTGTTGGG 50690 || || |||| ||||| | ||||| |||| |||||| | ||| | ||| | |||| Sbjct 1779461 GAGGCTGTCGGAATCGAGCAGGAGTTCCTCACTGACGCTCTTCCCTGCGGCCTGCTTGG- 1779519 Query 50691 CATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACAGATTGTTGTTGCA 50750 ||||||||| | |||||||||||||||||||||| || || ||| | || || || Sbjct 1779520 CATGAACGCCAAGCTGATGTGCGAGTACATTGAGTTCGTCGCTGACCGCCTGCTGGTGGC 1779579 Query 50751 GCTGGGACAAC-CGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACATAT 50809 || || |||| ||| ||||| || || |||||||| || ||| | ||| | Sbjct 1779580 CCTCGG-CAACAAGAAGTACTACAACGCTACCAACCCCTTCGACTTCATGGAGTCCATCT 1779638 Query 50810 CGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATAC 50856 | |||| ||||| || ||||| ||||||| ||||| || || ||| Sbjct 1779639 CCTTGGCCGGCAAGACCAACTTCTTCGAAAAGCGTGTCGGTGACTAC 1779685 >seq3 Length=5002383 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || | || | ||| ||||| || || |||||||||||| Sbjct 15449 CCACCACGTAGACGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGAA 15508 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||||| || || || || || || ||| |||| ||||||||||| || || || Sbjct 15509 AGTGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCAGGGGGA 15568 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||| || || | | || | || || | | || ||| Sbjct 15569 ATGCCCTCCTTATCTTGAATCTTGGACTTCACATTATCGATAGTATCGGATGACTCGACT 15628 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||||||||| | ||| || ||||| || |||||| Sbjct 15629 TCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCATA 15676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014298597120