Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03- 01] 16 sequences; 27,123,058 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 116 2e-21 seq3 95.1 8e-15 >seq1 Length=8587311 Score = 116 bits (128), Expect = 2e-21 Identities = 205/297 (69%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 6193 CGGACGCGTTCTACCGCTACAAAATGCCGCGCATCTGC--GCCAAGGTCGAGGGTAAGGG 6250 |||| | ||||| |||||||| ||| | | || | || || |||||||| ||||| Sbjct 2534863 CGGATCCCTTCTATCGCTACAAGATG--GAAAAGCTCCAGGCTAAAGTCGAGGGCAAGGG 2534920 Query 6251 AAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCC 6310 ||||||||||| ||||| | |||||| || ||||| || | ||| | || || Sbjct 2534921 CAACGGTATTAAGACCGTTGTCGTCAACTTGAACTCGGTCGCCCAGTCTCTCAGTCGGCC 2534980 Query 6311 TGCCACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCA 6370 | | |||| | | || || ||||||| |||||||| || ||| | | | | | Sbjct 2534981 TCCTGCCTATCTCATCAAGTACTTCGGGTTTGAACTTGGTGCCCAGGCCAACGCTAAGCC 2535040 Query 6371 CAAAAACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACT 6430 | ||||||| | ||| | ||||| || || | | ||||||| ||||||| || Sbjct 2535041 CTCCGACGAGCGTTGGATCATCAACGGTTCTCACGATGCCCCCAAGCTCCAGGACTACCT 2535100 Query 6431 TGACGGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||||||| || |||||||||||| || | | ||| | ||||| |||||||| Sbjct 2535101 TGACGGCTTCATCTCCAAGTTTGTGCTATGCAAGAAGTGCAAGAACCCTGAGACCGA 2535157 >seq3 Length=5002383 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||||||||| || |||||||||||||| || || ||||| || || Sbjct 15221 CCACCACGCAGACGCAACACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGAA 15280 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | || || || || || || || || || || || | || Sbjct 15281 AGAGTACGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGAGGA 15340 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || |||||| ||| || ||| || || | || || ||| || || || Sbjct 15341 ATACCCTCCTTGTCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACC 15400 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| ||| ||||| || || ||||| || || || || || ||||| Sbjct 15401 TCTAGTGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 15447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947134685296