Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03-
01] 16 sequences; 27,123,058 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq3 89.7 4e-13
seq1 89.7 4e-13
>seq3
Length=5002383
Score = 89.7 bits (98), Expect = 4e-13
Identities = 139/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| |||||||||||||| || | |||||| | || |||||| ||
Sbjct 15447 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACTATCACACTAGAGGTGGAGAGCTCA 15388
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| ||||| |||| ||| || | ||| ||||| || || ||||| |||||
Sbjct 15387 GACACCATCGACAACGTCA--AGAGC-AAGATTCA-GGACAAGGAGGGTATTCCTCCTGA 15332
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| |||| || || || || || | || |||| || ||| | || ||
Sbjct 15331 CCAGCAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTTTCGGACTA 15272
Query 25175 CAATATTCAAAAAGA 25189
||| || || || ||
Sbjct 15271 CAACATCCAGAAGGA 15257
Score = 86.0 bits (94), Expect = 5e-12
Identities = 139/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070
|| ||||| ||||||| || |||| || | || || ||||| || || |||||
Sbjct 15891 GTCAAGACCCTGACCGGAAAGACCATTACCCTTGAGGTTGAGTCTAGCGATACCATCGAC 15832
Query 25071 TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATT 25130
||||| ||| ||| ||||| || || ||||| |||||||| ||||| | ||
Sbjct 15831 AACGTGAAGTCAAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAGCAGCGTTTGATC 15772
Query 25131 TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAA 25190
||||||||||| || | || || | ||| || || || || || || || |||||
Sbjct 15771 TTTGCCGGCAAGCAGCTGGAGGACGGTCGTACCCTGTCTGACTATAACATCCAGAAAGAG 15712
Query 25191 TCCACGCTACATTTAGTGCT 25210
||||| ||||| || || ||
Sbjct 15711 TCCACTCTACACTTGGTCCT 15692
>seq1
Length=8587311
Score = 89.7 bits (98), Expect = 4e-13
Identities = 127/179 (71%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067
|| || ||||| |||| ||||| |||| || |||| || |||||| ||||| |||
Sbjct 959390 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGATGTCGAGTCGAGCGACACCATC 959449
Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127
|| | ||| || ||| ||||| || || ||||| |||||||||||||| |
Sbjct 959450 GACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAACAGCGTCTG 959509
Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186
|| || |||||||| || | || |||| ||||| || |||| ||||| || || ||
Sbjct 959510 ATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATCCAGAA 959568
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327915501040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |