Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03- 01] 16 sequences; 27,123,058 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq1 194 5e-44 seq5 113 1e-19 seq3 100 8e-16 >seq1 Length=8587311 Score = 194 bits (214), Expect = 5e-44 Identities = 573/878 (65%), Gaps = 9/878 (1%) Strand=Plus/Minus Query 155628 CTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGG 155687 ||||| || | ||||||| |||||||||||| || || || || | ||||||||| Sbjct 4411389 CTGTACTCGATAATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGG 4411330 Query 155688 TTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGT 155747 ||| || |||| |||||||||||||| || ||| | ||| | || ||||| |||| Sbjct 4411329 TTACTCTTCTTGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGG 4411270 Query 155748 GCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCC 155807 || || ||||| |||||| | | || || || |||| | | ||| ||| Sbjct 4411269 GCCTCGAGAATGGCGTACCAGAGCTTCTGAGCCTTGATGGTCTTGCGGCCACGGCCCTCC 4411210 Query 155808 GACTCATATTT--CATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAG 155865 ||| || || | || | ||| | | | || |||||||| |||| || |||| Sbjct 4411209 TGCTCGTACTTGGCGTAGAGAGCCTC--GAACTCATCACCGTAGACATCAGCTAGGCCAG 4411152 Query 155866 GGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATA 155925 || || || |||||| || |||| ||| || | || |||| ||| || | Sbjct 4411151 GGGCCTCATTGGGGCAGAAGAGCGTCCAGTCACCGTTGGCCTCGACGCGCTTCATGAAGA 4411092 Query 155926 CATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGAT 155985 ||| | ||| | ||| ||||||||||| | || |||||| | ||||||| Sbjct 4411091 GATCGGGGGTCCACAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCCTTACCGTGAT 4411032 Query 155986 TCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAA 156045 |||| || || || | ||| || | ||| | || |||||||| || || |||| Sbjct 4411031 TCTTGCGCAGATCGAGGAACTCGAAGACATCGGCGTGCCACGGCTCCAGGTAGATGGCAA 4410972 Query 156046 AACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACAC 156102 | ||| | |||| |||||||| || ||||| || || || || || || |||| Sbjct 4410971 AGGCACCGGGGCGCTTGTTACCACCCTGGTCCACATAACGTGCGGTGTTGTTAAACACAC 4410912 Query 156103 CTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATG 156162 |||||||||| |||||| ||||| | ||| |||||||| ||| | ||||| | | Sbjct 4410911 GCAGCATAGGAACAATACCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAAGAACCGGTAG 4410852 Query 156163 AGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATT 156222 ||||| || | || || || |||||||| | || || || || || Sbjct 4410851 CGCGAATGCGGTGGACATTGAGACCGATACCACCAGCGGTCTTGGAGATCATGGCACAGG 4410792 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||| | ||||| ||||||| ||||| || | || | || |||| | Sbjct 4410791 TCTTGAGAGTATCATAAATACCCTCAATGCTGTCTGCGCTCACGTCAACCAGGAAGCAAG 4410732 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | || ||| | || || | || ||||| || || || | || ||| | || | Sbjct 4410731 ATGCGAGCTGGGGTTGGGGAGTAGCGGCATTGAACAGAGTGGGGGAGGCGTGAGTGAAGT 4410672 Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATAC 156402 |||| | ||||| | | ||||||||| | |||||||| | |||||||| | Sbjct 4410671 ACTTTTGGGACATCAAGTGGTATGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGAATTC 4410612 Query 156403 AGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACT-CCATCAATTCGC 156461 || || || | |||| || |||||||||||||| ||| || | || | ||| || Sbjct 4410611 CGACAGCAACACGCATCAGCAAGTGCTGAGGACGCTCAGCAA-CATTGCCGTTAATCCGA 4410553 Query 156462 AGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 |||||||||| || || || || ||||| ||||| || Sbjct 4410552 AGAAGGTATGACCGCTCGAGGGTCTTAAATCCGAAGTA 4410515 >seq5 Length=1643254 Score = 113 bits (124), Expect = 1e-19 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 251445 ATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACA 251504 ||||||| ||||| | || || ||||| ||| | || ||||| | |||||||| Sbjct 1248039 ATCAGATACGTCAAAGAGACGCTCCTTGAGGAAAGCACTGGCGCCGTGGGCGATCATACA 1247980 Query 251505 ATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 |||||||||||| || ||||||||||||||||| || ||||| | |||||| ||||||| Sbjct 1247979 ATCACGCTCCATCTCTCCGAAACGAAGACCACCGTCACGAGCACGACCCTCCACAGGCTG 1247920 Query 251565 ACGAGTGAGA 251574 ||||||||| Sbjct 1247919 GCGAGTGAGA 1247910 >seq3 Length=5002383 Score = 100 bits (110), Expect = 8e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 302573 CTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTG 302632 ||||||||| ||||||||||| ||| || | ||||||| | ||||||| || ||||| | Sbjct 4596796 CTTCCATACCCTTGATTAAACAACGTTGCAGGTAACCAGATCTAGATGTCTTGACAGCAG 4596737 Query 302633 TATCAATTAGACCAACACGACCACCCATAGCATGGAAG 302670 ||||||| ||||| |||||||| |||| || |||||| Sbjct 4596736 TATCAATCAGACCCTCACGACCAGCCATGGCGTGGAAG 4596699 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||||||||||||| | || ||||| ||| || | ||||||||| Sbjct 4874521 AGAATTTCCTTCAGACGGGGAACACCAAGCGTGACGTT---CTTAGATGACACACCAGCA 4874465 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 ||||||||||| ||||| || | ||| || | |||||||| ||| || || |||| Sbjct 4874464 AAGTGGAAAGTGTTCAGTGTCATTTGCGTCGCAGGCTCACCGATAGACTGAGCGGCAAGA 4874405 Query 301933 ATACCAACCATTTCTCCTGG 301952 | || |||||||| || || Sbjct 4874404 ACGCCGACCATTTCACCAGG 4874385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817298277392