Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03-
01] 16 sequences; 27,123,058 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq2 98.7 9e-16
seq1 87.8 2e-12
>seq2
Length=5360957
Score = 98.7 bits (108), Expect = 9e-16
Identities = 247/375 (66%), Gaps = 29/375 (8%)
Strand=Plus/Plus
Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967
||| ||||||| || || || ||| |||||||||||||| || || || || || |||
Sbjct 1779326 GGCCTAATGCCTGGTCTCACTTTCTCCAACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 1779385
Query 46968 ACGGACTTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACAC 47026
|| |||||||| ||||| || || | | | | || || | | | | |
Sbjct 1779386 ACTGACTTTGCTTGTCTGCTGTT------CTCCC---------ACATGAACCACCGCCCC 1779430
Query 47027 GATCCTGAGCATGTTTAGG-----------GAGGCGGTGAGCATCGAAAAGGAGTTTTTT 47075
|| || || ||| ||| ||||| || | ||||| ||||||| |
Sbjct 1779431 GACCCCAAGGTGGTTGAGGATATCATTGTCGAGGCTGTCGGAATCGAGCAGGAGTTCCTC 1779490
Query 47076 ACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATT 47135
|||| || || ||| || | |||| ||||||||||| || |||||||| || |||
Sbjct 1779491 ACTGACGCTCTTCCCTGCGGCCTGCTTGGCATGAACGCCAAGCTGATGTGCGAGTACATT 1779550
Query 47136 GAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC-CGAAATATTTTAATGCTCG 47194
||||| || || || || ||| ||||| ||||| |||| ||| || | || |||
Sbjct 1779551 GAGTTCGTCGCTGACCGCCTGCTGGTGGCCCTCGG-CAACAAGAAGTACTACAACGCTAC 1779609
Query 47195 TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254
|| || || || || ||| | ||| || | | ||||| ||||| || ||||| ||
Sbjct 1779610 CAACCCCTTCGACTTCATGGAGTCCATCTCCTTGGCCGGCAAGACCAACTTCTTCGAAAA 1779669
Query 47255 ACGAGTCGGAGAGTA 47269
|| ||||| || ||
Sbjct 1779670 GCGTGTCGGTGACTA 1779684
>seq1
Length=8587311
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/221 (69%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAAT 148247
||| || ||||| ||||| || || | ||||| ||||| | | || ||||||||
Sbjct 4410700 GAACAGAGTGGGGGAGGCGTGAGTGAAGTACTTTTGGGACATCAAGTGGTATGTCTCAAT 4410641
Query 148248 AGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307
|| | || ||||| ||||||||||| || | || || ||||| |||| |||||| ||
Sbjct 4410640 GGCCTTCTCAATGTCCTCGCCGTGAATTCCGACAGCAACACGCATCAGCAAGTGCTGAGG 4410581
Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACC 148367
|| || ||||| | ||| ||| ||||| ||| |||||||| || | ||
Sbjct 4410580 ACGCTCAGCAACATTGCCGTTAATCCGAAGAAGGTATGACCGCTCGAGGGTCTTAAATCC 4410521
Query 148368 AAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408
||||| ||||| | || || | ||||| | || ||||
Sbjct 4410520 GAAGTAGTTGTAGTTGAAGTCACGGTCGTACACAATAGCCG 4410480
Score = 82.4 bits (90), Expect = 7e-11
Identities = 126/180 (70%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995
|| || |||||||||||||||| ||| || ||| |||||||| || |||| ||||
Sbjct 959568 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 959509
Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055
||||||||||| || || || ||||| || || || || || || | | ||
Sbjct 959508 AGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 959449
Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115
| || ||| ||| ||| || |||| || | || ||||| ||||| || || | ||||
Sbjct 959448 ATGGTGTCGCTCGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 959389
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476611104677760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |