Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03- 01] 16 sequences; 27,123,058 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1 233 2e-56 seq2 109 7e-19 seq3 105 8e-18 >seq1 Length=8587311 Score = 233 bits (258), Expect = 2e-56 Identities = 581/875 (66%), Gaps = 19/875 (2%) Strand=Plus/Minus Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 |||||| | || ||||||| || |||| |||||||||||| |||||| | Sbjct 4411447 GACATAGGTGGGGAGGGCGAGAGAAGCCAGGTTGCAAACAGCCACCTCATCAGGGGTACT 4411388 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||||| | ||| || || || | ||| || || ||| || |||| ||||| ||||| Sbjct 4411387 GTACTCGATAATCTCAGTGCACAGGTTAGAGCTGCGAATAGTACCCAGGTTCTTCTGGTT 4411328 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGA 111399 ||||||||||||||| |||||||||||||||||| |||| | || ||||| ||||| | Sbjct 4411327 ACTCTTCTTGTTGCAAGCATCCTTGTAGAGCATGAAGGGGTTACCAGTCTCAGTCTGGGC 4411268 Query 111400 TTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTT--GGCC-CGTCCCT 111455 | |||||| || | ||| | | || | | || | |||| || |||| || |||| Sbjct 4411267 CTCGAGAATGGCGTACCAGAGCTTCTGAGCCTTG----ATGGTCTTGCGGCCACGGCCCT 4411212 Query 111456 CCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTG 111515 || ||||||||| | |||||| || || ||||| ||||| | || | || || | Sbjct 4411211 CCTGCTCGTACTTGGCGTAGAGAGCCTCGAACTCATCACCGTAGACATCAGCTAGGCCAG 4411152 Query 111516 GTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAA 111575 | |||| | || ||||| || | ||| | ||| |||| || ||||||||||| | Sbjct 4411151 GGGCCTCATTGGGGCAGAAGAGCGTCCAGTCACCGTTGGCCTCGACGCGCTTCATGAAGA 4411092 Query 111576 GGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGT 111635 | || || ||||||| | | || || || | | ||| |||| || | ||| || | Sbjct 4411091 GATCGGGGGTCCACAGAGCGTAGAAAAGGTCACGAGCGCGAACCTCCTCCTTACCGTGAT 4411032 Query 111636 TGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGA 111695 | || | || |||||||| | || ||| |||||||| ||||| || |||| || | Sbjct 4411031 TCTTGCGCAGATCGAGGAACTCGAAGACATCGGCGTGCCACGGCTCCAGGTAGATGGCAA 4410972 Query 111696 TAGATCC------CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 111749 | || ||| | ||| | || | ||||| || || ||| |||||| | Sbjct 4410971 AGGCACCGGGGCGCTTGTTA---CCACCCTGGTCCACATAACGTGCGGTGTTGTTAAACA 4410915 Query 111750 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 111809 | || ||||| |||| |||||| | || || || || || ||| ||| Sbjct 4410914 CACGCAGCATAGGAACAATACCGTTGGAGGAGCCGTTGGTTCCAGCAATGTAAGAACCGG 4410855 Query 111810 TGGCTCTCACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCAC 111869 | || | | |||| | | || ||||| ||||| ||| ||||| |||| Sbjct 4410854 TAGCGCGAATGCGGTGGACATTGAGACCGATACCACCAGCGGTCTTGGAGATCATGGCAC 4410795 Query 111870 ACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGC 111929 | | | ||||| |||| ||||| | || ||| | | | | | ||||||| Sbjct 4410794 AGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCTGCGCTCACGTCAACCAGGAAGC 4410735 Query 111930 AACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGA 111989 || | | ||| ||| || ||| | |||||||| || || || | |||||| ||| Sbjct 4410734 AAGATGCGAGCTGGGGTTGGGGAGTAGCGGCATTGAACAGAGTGGGGGAGGCGTGAGTGA 4410675 Query 111990 ACATAC-CTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGG 112048 | ||| |||||||||| || ||||||||| | | | |||||||| || ||||| Sbjct 4410674 A-GTACTTTTGGGACATCAAGTGGTATGTCTCAATGGCCTTCTCAATGTCCTCGCCGTGA 4410616 Query 112049 ATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 || |||| || || ||||| | || || ||| || Sbjct 4410615 ATTCCGACAGCAACACGCATCAGCAAGTGCTGAGG 4410581 >seq2 Length=5360957 Score = 109 bits (120), Expect = 7e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||||||||||||||| ||||| || | || || ||||| ||||| Sbjct 1779396 GCAAAGTCAGTGTGGAGACCCTCATCACGGGAGATCAACTCGTTGGAGAAAGTGAGACCA 1779337 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||||| ||| | || | | |||||| ||||||||||||||| Sbjct 1779336 GGCATTAGGCCACGCTTCTTCAGCCAGAAGATGGAGGCGAATGAGCCGGAGAAGAAGATA 1779277 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG 122818 ||||||||| || || |||| || || ||||||| Sbjct 1779276 CCCTCCACAGCGGCGAAGGCAACCAGACGCGAAGCGAAGG 1779237 >seq3 Length=5002383 Score = 105 bits (116), Expect = 8e-18 Identities = 188/270 (70%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 11620 CTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGAT 11679 ||| || | ||||||||| ||||||||||||| || || || ||| | |||||| | Sbjct 3509363 CTTTCCAATCGCATCAATTTCATCAATGAAGATGATGCAGGGGGTATTCTTCCGGGCGGT 3509304 Query 11680 TTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGC 11739 | | ||||||||||| || | || || ||||| |||||||| || ||||| | | Sbjct 3509303 TGCGAAGAGATCGCGGACACGAGAGGGTCCGACACCGACAAACATTTCGACAAACTCGGA 3509244 Query 11740 GGCAGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGG 11798 || | ||||| | ||| || || |||||||| || |||| || || | | Sbjct 3509243 ACCACTGACACTGTA-GAAAGGCACGCCGGATTCACCAGCAGTGGCCTTAGCAAGCAATG 3509185 Query 11799 TCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACC--ACT 11856 |||| || ||||| || ||| | ||||| ||| || || || ||||| ||||| ||| Sbjct 3509184 TCTTACCAGTACCGGGGGGACCTGAGAGAATGGCACCACGAGGAATCTTTGCACCCAACT 3509125 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAA 11886 || | | | ||||||||||| ||| || Sbjct 3509124 TCTCGA--ACCGCTCGGGTTGCTGGAGGAA 3509097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031874393600