Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03-
01] 16 sequences; 27,123,058 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq3 122 5e-23
seq2 84.2 1e-11
>seq3
Length=5002383
Score = 122 bits (134), Expect = 5e-23
Identities = 160/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||||||||| || |||||||||||||| || ||||| || || ||||| || ||
Sbjct 15230 AGACGCAACACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGAAAGAGTACGG 15289
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || || || ||||| || || || | |||||| ||||| || || | ||||||
Sbjct 15290 CCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGAGGAATACCCTCC 15349
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || ||| | || |||||| ||||||||| || | ||
Sbjct 15350 TTGTC-CTGAATCTTGCTCTTGACGTTGTCGATGGTGTCTGAGCTCTCCACCTCTAGTGT 15408
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| || || || ||||| || |||||
Sbjct 15409 GATAGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 15447
Score = 111 bits (122), Expect = 1e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
||||| | || || | |||| |||||||||| |||||| || |||||||| || ||
Sbjct 15963 CCGCCACGGAGGCGAAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGAC 16022
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
||||| || |||| || || || || |||||||| || |||||||| |||||||| ||
Sbjct 16023 AGTGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGA 16082
Query 34600 ACTCCCTCCTTGTCTGTGATCTTT 34623
| ||||||||||| |||||||
Sbjct 16083 ATGCCCTCCTTGTCCTGGATCTTT 16106
Score = 95.1 bits (104), Expect = 8e-15
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || |||||| ||| || || |||||||| || || || || ||
Sbjct 15686 AGACGGAGGACCAAGTGTAGAGTGGACTCTTTCTGGATGTTATAGTCAGACAGGGTACGA 15745
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || |||||||| || |||||||| ||||| || || | ||||||
Sbjct 15746 CCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCC 15805
Query 34609 TTGTCTGTGATCTTT 34623
||||| |||||||
Sbjct 15806 TTGTCCTGGATCTTT 15820
>seq2
Length=5360957
Score = 84.2 bits (92), Expect = 1e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574
|||||| || ||||| ||||| ||||| || || |||| || || || ||||| || ||
Sbjct 1552166 CTCCTTCTGGATGTTGTAATCCGAAAGAGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAA 1552107
Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615
|| ||||| |||||||| || || | |||||||||||||
Sbjct 1552106 GATCAAACGTTGTTGGTCAGGGGGAATACCCTCCTTGTCTG 1552066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314729538627728
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |