Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03- 01] 16 sequences; 27,123,058 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq3 167 6e-36 seq1 111 4e-19 >seq3 Length=5002383 Score = 167 bits (184), Expect = 6e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || ||| | || ||||| || ||||| || |||||||| ||||||||| Sbjct 15444 CAAATCTTTGTCAAGACTTTGACCGGAAAGACTATCACACTAGAGGTGGAGAGCTCAGAC 15385 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| |||||||||||||| || || || ||||| |||||||| Sbjct 15384 ACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCTCCTGACCAGCAG 15325 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || || ||||| || ||||| | |||||| | || || ||| || Sbjct 15324 CGTCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTTTCGGACTACAACATC 15265 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTG 178133 || || || || ||||| || || ||| Sbjct 15264 CAGAAGGAGAGCACTCTGCACCTGGTGTTG 15235 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || || ||||| || || || || || || Sbjct 15672 CAGATTTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTCGAGTCATCCGAT 15613 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||| || || || || || || || ||||||||| Sbjct 15612 ACTATCGATAATGTGAAGTCCAAGATTCAAGATAAGGAGGGCATTCCCCCTGACCAGCAA 15553 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| |||||||| ||||| || ||||| | || ||| ||||||| ||| || Sbjct 15552 CGTCTCATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACACTTTCCGATTACAACATC 15493 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| ||||| || ||||| Sbjct 15492 CAGAAGGAATCCACACTCCACCTTGT 15467 Score = 125 bits (138), Expect = 2e-23 Identities = 140/187 (75%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || |||||||| ||||| || | || |||||||| || ||||| Sbjct 16167 TCACTGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCGACAATGTCAAGT 16108 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 |||||| |||||||| || || || || ||||||||||| || | ||||| ||||||| Sbjct 16107 CAAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTTTGATCTTTGCCGGAA 16048 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | |||||||| || || | || || |||| |||||| |||| || || || || || | Sbjct 16047 AGCAGCTCGAGGACGGTCGCACACTGTCCGACTATAACATCCAGAAGGAGTCCACTCTCC 15988 Query 178123 ATCTTGT 178129 |||| || Sbjct 15987 ATCTGGT 15981 >seq1 Length=8587311 Score = 111 bits (122), Expect = 4e-19 Identities = 135/183 (74%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA---AGCTCAGACAC 177985 |||||| || || || || || || || || |||||||| || || ||| ||||| Sbjct 959389 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGATGTCGAGTCGAGC---GACAC 959445 Query 177986 CATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACG 178045 |||||| |||||||| ||||| |||||||| || || || || || ||||| || || Sbjct 959446 CATCGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAACAGCG 959505 Query 178046 ACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCA 178105 || ||||||||||| || |||||||| ||||| | || || ||| || ||| |||| Sbjct 959506 TCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATCCA 959565 Query 178106 AAA 178108 || Sbjct 959566 GAA 959568 Score = 84.2 bits (92), Expect = 5e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 214204 AGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGCTCTTCCCTCGTTTTCG 214263 |||||| | |||||| | || ||||| | | ||| | | | ||||| | ||| Sbjct 4411263 AGAATGGCGTACCAGAGCTTCTGAGCCTTGATGGTCTTGCGGCCACGGCCCTCCTGCTCG 4411204 Query 214264 TACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCATCAAGACCGGGAGCCTCG 214323 ||||| | || |||| ||| || || ||||||||||||| | || || || ||||| Sbjct 4411203 TACTTGGCGTAGAGAGCCTCGAACTCATCACCGTAGACATCAGCTAGGCCAGGGGCCTCA 4411144 Query 214324 TTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTTTCATGAAAAGGTCGGAA 214383 ||||||||||| || |||| | || || || ||| | |||||||| || |||| Sbjct 4411143 TTGGGGCAGAAGAGCGTCCAGTCACCGTTGGCCTCGACGCGCTTCATGAAGAGATCGGGG 4411084 Query 214384 GTCCAGATTGCATAAAAAA 214402 ||||| | || || |||| Sbjct 4411083 GTCCACAGAGCGTAGAAAA 4411065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730953235104