Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001599855.1_202016-03- 01] 16 sequences; 27,123,058 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1 147 2e-30 seq3 140 3e-28 seq2 96.9 3e-15 >seq1 Length=8587311 Score = 147 bits (162), Expect = 2e-30 Identities = 144/183 (79%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 ||||||| ||||| |||||| |||||||| | || |||||||||||||||||||| | Sbjct 959570 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 959511 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792 |||| ||||||||||| | ||||| || |||||||||| ||| || ||| ||| | Sbjct 959510 TCAGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTT-GACGTTG 959452 Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851 | | |||||||||||||| || || | || || || ||||||||||| ||||| ||| Sbjct 959451 TCGATGGTGTCGCTCGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 959392 Query 41852 AAA 41854 ||| Sbjct 959391 AAA 959389 >seq3 Length=5002383 Score = 140 bits (154), Expect = 3e-28 Identities = 155/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| || || || | |||||||| || ||| ||||||||| |||||||||||||| Sbjct 15963 CCGCCACGGAGGCGAAGGACCAGATGGAGAGTGGACTCCTTCTGGATGTTATAGTCGGAC 16022 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| ||||| || |||| ||||| ||||||| |||| Sbjct 16023 AGTGTGCGACCGTCCTCGAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCCGGGGGA 16082 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||||||| ||| ||| ||| || | || | || ||||| ||||| | Sbjct 16083 ATGCCCTCCTTGTCCTGGATCTTTGACTTGACATTGTCG--ATGGTATCGCTGGACTCAA 16140 Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838 |||| | || || || || || || Sbjct 16141 CCTCAAGGGTGATGGTCTTGCCAGT 16165 Score = 138 bits (152), Expect = 1e-27 Identities = 163/218 (75%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || ||| ||| ||||| ||||||||||| || Sbjct 15677 CCACCACGGAGACGGAGGACCAAGTGTAGAGTGGACTCTTTCTGGATGTTATAGTCAGAC 15736 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || |||||||||||||| || |||| ||||| ||||| | |||| Sbjct 15737 AGGGTACGACCGTCCTCCAGCTGCTTGCCGGCAAAGATCAAACGCTGCTGGTCAGGGGGA 15796 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| ||| |||| ||| | | | || ||||| ||||| || Sbjct 15797 ATGCCCTCCTTGTCCTGGATCTTTGACTTC-ACGTTGTCGATGGTATCGCTAGACTCAAC 15855 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGA 41852 ||| | || || || || || ||||| ||||| |||| Sbjct 15856 CTCAAGGGTAATGGTCTTTCCGGTCAGGGTCTTGACGA 15893 Score = 123 bits (136), Expect = 2e-23 Identities = 171/233 (73%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| |||||||| ||||| |||||||||||||| ||||| ||||| || Sbjct 15220 GCCACCACGCAGACGCAACACCAGGTGCAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGA 15279 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || || || | || || |||||||| || ||||| || || ||||| ||||| | || Sbjct 15280 AAGAGTACGGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGAGG 15339 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCT-TCAACGACGAC-ACAGTGTC---GCTCGAC 41809 || | |||||||||| ||| | ||||| | ||| | | | ||||| ||| | Sbjct 15340 AATACCCTCCTTGTCC-TGA-ATCTTGCTCTTGACGTTGTCGATGGTGTCTGAGCT---C 15394 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| | || || || || || |||| ||||| || || || ||||| Sbjct 15395 TCCACCTCTAGTGTGATAGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 15447 Score = 109 bits (120), Expect = 5e-19 Identities = 166/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || |||||||| | || || || || ||| |||||||| ||||| || ||||| Sbjct 15449 CCACCACGTAGACGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGAA 15508 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || |||||||| ||||| || || || || || ||||| | |||| Sbjct 15509 AGTGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCAGGGGGA 15568 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812 | || |||||| || ||| | || | ||||| | | ||| | || ||| ||||| Sbjct 15569 ATGCCCTCCTTATCT-TGAATCTTGGACTTCACATTATCGATA--GTATCGGATGACTCG 15625 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || | || || || || || || || ||||| |||||||||||||| Sbjct 15626 ACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 15675 >seq2 Length=5360957 Score = 96.9 bits (106), Expect = 3e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | ||| || || || || ||||||||| ||||| || || Sbjct 1552205 ACCACCACCACGCAGGCGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 1552146 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| |||| ||||||||||| || ||||| |||| || |||||||| | Sbjct 1552145 CGAAAGAGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGG 1552086 Query 41752 GGGAACGCTCTCCTTGTC 41769 ||||| | ||||||||| Sbjct 1552085 GGGAATACCCTCCTTGTC 1552068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303907539200