Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001939915.1_202017-01- 09] 1,168 sequences; 26,071,999 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq1023 96.9 3e-15 seq189 87.8 1e-12 >seq1023 Length=175318 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 45147 CCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATA 45206 ||||||| |||||||||||| |||| ||| | || || || || || |||||||| | Sbjct 138129 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 138070 Query 45207 TCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG 45266 ||| ||||||||||| || || | |||||||||||| || || ||| || Sbjct 138069 TCAGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGT 138010 Query 45267 CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAA 45326 | | | |||| | ||| || || | |||||| ||||| |||||||| ||||| || | Sbjct 138009 CGATGGTGTCGCTCGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 137950 Query 45327 A 45327 | Sbjct 137949 A 137949 >seq189 Length=53202 Score = 87.8 bits (96), Expect = 1e-12 Identities = 127/185 (69%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||| ||||| ||||| ||||| ||| ||| |||| || Sbjct 52961 ACCARRTGKAGAGTGGACTCYTTCTGGATGTTATAGTCRGACAGKGTRCGACCGTCCTCS 52902 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || ||||| ||||| ||||| || || | |||||||||||| Sbjct 52901 AGCTGCTTKCCGGCAAAGATCAAACGCTGCTGGTCMGGGGGAATGCCCTCCTTGTCCTGG 52842 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | || | ||| ||||| | ||| || |||||| Sbjct 52841 ATCTTTGACTTSACRTTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTCTTG 52782 Query 45308 CCCGT 45312 || || Sbjct 52781 CCAGT 52777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395069576104528