Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001939915.1_202017-01- 09] 1,168 sequences; 26,071,999 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq190 131 1e-25 seq189 95.1 1e-14 seq1023 91.5 1e-13 seq923 84.2 2e-11 >seq190 Length=431 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| |||||||| || | || Sbjct 64 ATGCAGATTTTCGTCAAGACACTCACCGGCAAGACTATCACACTTGAAGTCGAGTCATCC 123 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | || || |||||||| |||||||| ||||| || || || Sbjct 124 GATACTATCGATAATGTGAAGTCCAAGATTCAAGATAAGGAGGGCATTCCCCCTGACCAG 183 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| || ||| | |||||| ||||| | |||||||||||| Sbjct 184 CAACGTCTCATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACACTTTCCGATTACAAC 243 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || |||||||| Sbjct 244 ATCCAGAAGGAATCCAC 260 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/140 (71%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| || || ||||| | | | Sbjct 292 ATGCARATYTTYGTCAAGACWYTSACCGGMAAGACTATCACACTAGAGGTGGAGAGCTCA 351 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||| ||||||||||||||||| || || || Sbjct 352 GACACCATCGACAACGTCAAGAGCAAGATTCAGGACAAGGAGGGTATTCCYCCTGACCAG 411 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || || || || Sbjct 412 CARCGTCTYATCTTYGCYGG 431 >seq189 Length=53202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 || || || || |||| ||||| || || ||| ||||||| | ||| | | || | Sbjct 52777 ACTGGCAAGACCATCACCCTTGAGGTTGAGTCCAGCGATACCATCGACAAYGTSAAGTCA 52836 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||| ||||| || || || || ||| | || |||||||| || Sbjct 52837 AAGATCCAGGACAAGGAGGGCATTCCCCCKGACCAGCAGCGTTTGATCTTTGCCGGMAAG 52896 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | ||||| || || | || || || ||||| || || || ||||| Sbjct 52897 CAGCTSGAGGACGGTCGYACMCTGTCYGACTATAACATCCAGAARGAGTCCAC 52949 >seq1023 Length=175318 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || ||||| || | || || || || || | | ||| ||| | Sbjct 137948 TTTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGATGTCGAGTCGAGCGACACCAT 138007 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| | |||| || || || ||||||||||| ||||| || || ||||| ||||| Sbjct 138008 CGACAACGTCAAGACCAAGATCCAGGACAAGGAGGGCATTCCCCCTGACCAACAGCGTCT 138067 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || |||||||| ||| | |||||| ||||||| | ||| |||||||| || || Sbjct 138068 GATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATCCAGAA 138127 >seq923 Length=14999 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||||||||| || || ||||||||| | || || || || || ||| | || Sbjct 11426 AGACAAGGAGGGTATTCCCCCTGACCAACAACGTTTGATCTTCGCTGGTAAGCAGCTCGA 11485 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| |||||| | || ||||||||||| || || || || ||| Sbjct 11486 GGACGGCCGCACTCTTTCGGATTACAACATCCAGAAGGAGTCGACC 11531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419722025171920