Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001939915.1_202017-01- 09] 1,168 sequences; 26,071,999 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq927 98.7 9e-16 seq721 87.8 2e-12 seq1023 82.4 7e-11 >seq927 Length=85386 Score = 98.7 bits (108), Expect = 9e-16 Identities = 247/375 (66%), Gaps = 29/375 (8%) Strand=Plus/Plus Query 46908 GGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACAC 46967 ||| ||||||| || || || ||| |||||||||||||| || || || || || ||| Sbjct 51884 GGCCTAATGCCTGGTCTCACTTTCTCCAACGAGTTGATCTCCCGTGATGAGGGTCTCCAC 51943 Query 46968 ACGGACTTTGCGTGTCT-CTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACAC 47026 || |||||||| ||||| || || | | | | || || | | | | | Sbjct 51944 ACTGACTTTGCTTGTCTGCTGTT------CTCCC---------ACATGAACCACCGCCCC 51988 Query 47027 GATCCTGAGCATGTTTAGG-----------GAGGCGGTGAGCATCGAAAAGGAGTTTTTT 47075 || || || ||| ||| ||||| || | ||||| ||||||| | Sbjct 51989 GACCCCAAGGTGGTTGAGGATATCATTGTCGAGGCTGTCGGAATCGAGCAGGAGTTCCTC 52048 Query 47076 ACTGCGGCGCTGCCCGTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATT 47135 |||| || || ||| || | |||| ||||||||||| || |||||||| || ||| Sbjct 52049 ACTGACGCTCTTCCCTGCGGCCTGCTTGGCATGAACGCCAAGCTGATGTGCGAGTACATT 52108 Query 47136 GAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAAC-CGAAATATTTTAATGCTCG 47194 ||||| || || || || ||| ||||| ||||| |||| ||| || | || ||| Sbjct 52109 GAGTTCGTCGCTGACCGCCTGCTGGTGGCCCTCGG-CAACAAGAAGTACTACAACGCTAC 52167 Query 47195 TAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 || || || || || ||| | ||| || | | ||||| ||||| || ||||| || Sbjct 52168 CAACCCCTTCGACTTCATGGAGTCCATCTCCTTGGCCGGCAAGACCAACTTCTTCGAAAA 52227 Query 47255 ACGAGTCGGAGAGTA 47269 || ||||| || || Sbjct 52228 GCGTGTCGGTGACTA 52242 >seq721 Length=8534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 148188 GAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAAT 148247 ||| || ||||| ||||| || || | ||||| ||||| | | || |||||||| Sbjct 4970 GAACAGAGTGGGGGAGGCGTGAGTGAAGTACTTTTGGGACATCAAGTGGTATGTCTCAAT 4911 Query 148248 AGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGG 148307 || | || ||||| ||||||||||| || | || || ||||| |||| |||||| || Sbjct 4910 GGCCTTCTCAATGTCCTCGCCGTGAATTCCGACAGCAACACGCATCAGCAAGTGCTGAGG 4851 Query 148308 TCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGGGTTTTGTAACC 148367 || || ||||| | ||| ||| ||||| ||| |||||||| || | || Sbjct 4850 ACGCTCAGCAACATTGCCGTTAATCCGAAGAAGGTATGACCGCTCGAGGGTCTTAAATCC 4791 Query 148368 AAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 ||||| ||||| | || || | ||||| | || |||| Sbjct 4790 GAAGTAGTTGTAGTTGAAGTCACGGTCGTACACAATAGCCG 4750 >seq1023 Length=175318 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/180 (70%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 131936 TTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGATT 131995 || || |||||||||||||||| ||| || ||| |||||||| || |||| |||| Sbjct 138127 TTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 138068 Query 131996 AGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTTCC 132055 ||||||||||| || || || ||||| || || || || || || | | || Sbjct 138067 AGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 138008 Query 132056 ACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAA 132115 | || ||| ||| ||| || |||| || | || ||||| ||||| || || | |||| Sbjct 138007 ATGGTGTCGCTCGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAAA 137948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476604241476480