Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001939915.1_202017-01- 09] 1,168 sequences; 26,071,999 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq190 107 1e-18 seq189 100 2e-16 seq1023 93.3 3e-14 >seq190 Length=431 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || ||| ||||| |||||||||||||||| ||| ||| | || || Sbjct 272 ACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGAAAGTGTGCGACCATCCTCA 213 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | ||| ||||| || | || | || ||||| || Sbjct 212 AGCTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCAGGGGGAATGCCCTCCTTATCTTGA 153 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||||| | | || || |||| || || || || | || || ||||| Sbjct 152 ATCTTGGACTTCACATTATCGATAGTATCGGATGACTCGACTTCAAGTGTGATAGTCTTG 93 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| ||||| ||||| || ||||| Sbjct 92 CCGGTGAGTGTCTTGACGAAAATCTGCAT 64 >seq189 Length=53202 Score = 100 bits (110), Expect = 2e-16 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||| || || ||| ||| || |||||||| || || | || || |||| || Sbjct 52961 ACCARRTGKAGAGTGGACTCYTTCTGGATGTTATAGTCRGACAGKGTRCGACCGTCCTCS 52902 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||||||||||||||| || | || | || ||||| ||| Sbjct 52901 AGCTGCTTKCCGGCAAAGATCAAACGCTGCTGGTCMGGGGGAATGCCCTCCTTGTCCTGG 52842 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | ||||| ||| ||| || ||||| | || || ||||| Sbjct 52841 ATCTTTGACTTSACRTTGTCGATGGTATCGCTGGACTCAACCTCAAGGGTGATGGTCTTG 52782 Query 44309 CCCGTGA 44315 || |||| Sbjct 52781 CCAGTGA 52775 Score = 100 bits (110), Expect = 2e-16 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 44181 CGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCT 44240 |||| ||||||||||| ||||||||||||||||||||||| || | || | || |||| Sbjct 53195 CGTCCTCCAGCTGCTTKCCGGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCT 53136 Query 44241 TTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAA 44300 | ||| ||||| ||| | | | ||||| ||| || || ||||| | || | Sbjct 53135 TGTCCTGGATCTTTGACTTSACRTTGTCGATGGTATCGCTRGACTCAACCTCAAGGGTRA 53076 Query 44301 TCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | |||||||| || |||||||| |||| Sbjct 53075 TGGTCTTTCCGGTCAGGGTCTTGACGA 53049 >seq1023 Length=175318 Score = 93.3 bits (102), Expect = 3e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||| ||||||||||| ||| || ||| | || || |||||||| ||||| |||| Sbjct 138129 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 138070 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 ||| |||||| || || | || | || ||||| ||| ||||| ||| | | Sbjct 138069 TCAGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGT 138010 Query 44268 CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGA 44327 | ||||||||| || || || || | ||||| ||||| ||||| |||||||| |||| Sbjct 138009 CGATGGTGTCGCTCGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGA 137950 Query 44328 A 44328 | Sbjct 137949 A 137949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359985275536656