Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penicillium_20roqueforti_20[genbank_20GCA_5F001939915.1_202017-01-
09] 1,168 sequences; 26,071,999 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq1023 147 2e-30
seq189 125 7e-24
seq190 107 2e-18
seq923 96.9 3e-15
>seq1023
Length=175318
Score = 147 bits (162), Expect = 2e-30
Identities = 144/183 (79%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
||||||| ||||| |||||| |||||||| | || |||||||||||||||||||| |
Sbjct 138129 CCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGA 138070
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG 41792
|||| ||||||||||| | ||||| || |||||||||| ||| || ||| ||| |
Sbjct 138069 TCAGACGCTGTTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTT-GACGTTG 138011
Query 41793 AC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACG 41851
| | |||||||||||||| || || | || || || ||||||||||| ||||| |||
Sbjct 138010 TCGATGGTGTCGCTCGACTCGACATCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACG 137951
Query 41852 AAA 41854
|||
Sbjct 137950 AAA 137948
>seq189
Length=53202
Score = 125 bits (138), Expect = 7e-24
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || || || | |||| || || ||| ||| ||||| ||||||||||| ||
Sbjct 52979 CCGCCACGGAGRCGRAGGACCARRTGKAGAGTGGACTCYTTCTGGATGTTATAGTCRGAC 52920
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| || |||||||| ||||| || |||| ||||| ||||| | ||||
Sbjct 52919 AGKGTRCGACCGTCCTCSAGCTGCTTKCCGGCAAAGATCAAACGCTGCTGGTCMGGGGGA 52860
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||||| ||| ||| ||| || | | | || ||||| ||||| ||
Sbjct 52859 ATGCCCTCCTTGTCCTGGATCTTTGACTTS-ACRTTGTCGATGGTATCGCTGGACTCAAC 52801
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
||| | || || || || || ||
Sbjct 52800 CTCAAGGGTGATGGTCTTGCCAGT 52777
Score = 89.7 bits (98), Expect = 5e-13
Identities = 109/148 (74%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 41706 CGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCT 41765
|||| || |||||||| ||||| || |||| ||||| ||||| | ||||| || |||||
Sbjct 53195 CGTCCTCCAGCTGCTTKCCGGCAAAGATCAAACGCTGCTGGTCAGGGGGAATGCCCTCCT 53136
Query 41766 TGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTT 41824
||||| ||| ||| ||| || | | | || ||||| ||||| ||||| | ||
Sbjct 53135 TGTCCTGGATCTTTGACTTS-ACRTTGTCGATGGTATCGCTRGACTCAACCTCAAGGGTR 53077
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGA 41852
|| || || || ||||| ||||| ||||
Sbjct 53076 ATGGTCTTTCCGGTCAGGGTCTTGACGA 53049
>seq190
Length=431
Score = 107 bits (118), Expect = 2e-18
Identities = 165/230 (72%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || || || || ||| |||||||| ||||| || |||||
Sbjct 290 CCACCACGKAGACGGAGGACAAGGTGGAGTGTGGATTCCTTCTGGATGTTGTAATCGGAA 231
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| | || || |||||||| ||||| || || || || || ||||| | ||||
Sbjct 230 AGTGTGCGACCATCCTCAAGCTGCTTTCCGGCAAAGATGAGACGTTGCTGGTCAGGGGGA 171
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCA-ACGA-CGACACAGTGTCGCTCGACTCC 41812
| || |||||| || ||| | || | ||||| | | ||| | || ||| |||||
Sbjct 170 ATGCCCTCCTTATCT-TGAATCTTGGACTTCACATTATCGATA--GTATCGGATGACTCG 114
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| || | || || || || || || || ||||| ||||||||||||||
Sbjct 113 ACTTCAAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAAATCTGCAT 64
>seq923
Length=14999
Score = 96.9 bits (106), Expect = 3e-15
Identities = 104/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
||| || || || || || | ||| || || || || ||||||||| ||||| || ||
Sbjct 11564 ACCACCACCACGCAGGCGGAGCACGAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAATC 11505
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| || ||||| |||| ||||||||||| || ||||| |||| || |||||||| |
Sbjct 11504 CGAAAGAGTGCGGCCGTCCTCGAGCTGCTTACCAGCGAAGATCAAACGTTGTTGGTCAGG 11445
Query 41752 GGGAACGCTCTCCTTGTC 41769
||||| | |||||||||
Sbjct 11444 GGGAATACCCTCCTTGTC 11427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462297250361600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |