Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20sclerotiorum_20[genbank_20GCA_5F001750025.1_202016-09- 29] 228 sequences; 34,025,097 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 161 2e-34 seq5 104 5e-17 seq3 91.5 3e-13 seq4 89.7 1e-12 >seq2 Length=2385438 Score = 161 bits (178), Expect = 2e-34 Identities = 281/405 (69%), Gaps = 14/405 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| |||||||||| ||||||||||||||||||||| ||| Sbjct 270738 TCGAAGAAGTTGGTCTTGCCAGCCAGAGAGATAGACTCCATGAAGTCGAAGGGGTTGGTG 270679 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||| | | ||| | | ||| || || || | || ||||| || || ||||| | Sbjct 270678 GCATTGAAGTACTTCTGGTTGCCGAGAGCGACCAGGAGACGGTCAGCGACGAACTCGATG 270619 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || | ||| || | | ||||||||||| || | ||| |||| || ||| | | Sbjct 270618 TATTGGCACATGAGCTTGGCGTTCATGCCAAGCAGAGCACAGGGAAGGGCATCAGTCAGG 270559 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT--TGCCTTCA-----CCTGTGCCAG 251795 || |||| ||| || | || | |||| ||||| || | ||| | || | || Sbjct 270558 AACTCCTGCTCGATGCCGACAG---CCTCGACAATGATGTCCTCAACAACCTTGGGGGAG 270502 Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855 | | | ||||| || | ||| | || || | | || | ||| |||||||| Sbjct 270501 GGGC-GGTTGTT---GAGGTGGGAGAAAAGCAGACAGGCGAAGTCGGTGTGGAGACCCTC 270446 Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 || ||| ||| | ||||||||| | | ||| |||||||||| ||||| ||| | || Sbjct 270445 ATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCAGGCATCAGACCACGCTTCTTCAG 270386 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 ||||||||| | | |||||| |||||||| | | |||||| || Sbjct 270385 CCAGAAGATAGAGGCAAAGGAGCCAGAGAAGAAGATACCCTCAAC 270341 >seq5 Length=1529696 Score = 104 bits (114), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751 ||| || || ||||| || ||||||||||||||||||||||| || |||||||||| || Sbjct 519426 GCCTGTTGGATCTCTATCCGGTGGTTGGAAGATGAAGCTGGCTCTTGCTCGCGCCATGCT 519485 Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811 | | ||||||||||| || || || || || || |||||| |||| | ||||| Sbjct 519486 GCAGAAGGCCGATGTCCTCCTCCTGGACGAACCTACTAACCACTTGGATGTTGCAAACGT 519545 Query 279812 AGCCTGGCT---AGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTC 279868 ||||| || | ||||| | | | | | || | | ||||| || Sbjct 519546 GAAGTGGCTGCAAGAG---TACCTCAAGAAGCACACACAAATTACCAGTTTGATTGTTTC 519602 Query 279869 TCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920 |||||||||||| ||||| |||| || ||| ||| |||| |||||| ||| Sbjct 519603 TCACGACTCTGGTTTCCTTGATGAGGTCTGCACTGACATCTATCACTACGAG 519654 >seq3 Length=2224433 Score = 91.5 bits (100), Expect = 3e-13 Identities = 258/396 (65%), Gaps = 8/396 (2%) Strand=Plus/Plus Query 218440 GATGAGCGCAAGACCTGGCTGCTCGACTTCCAGCCCGGAAACCAGTTGGACCAGTCGAAG 218499 |||||||| ||| ||||| | | | ||| ||||||| | | | | || || || | | Sbjct 241130 GATGAGCGAAAGGAATGGCTTCGCCAATTCAAGCCCGGTACCTATCTTGATCACTCCATG 241189 Query 218500 ACCAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTAT--- 218556 ||| || | | | || |||||| ||||||||||||| || || | |||| Sbjct 241190 GACAAGATTTCGTACACCGATTTCATCAACAAGGAGCTCATCCTCTT----CAGTATGGC 241245 Query 218557 -GATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGAT 218615 ||| ||||||| |||||| ||| || |||||| | ||||| || ||||| | Sbjct 241246 CGATAACCAGCGTTCCATTCCCTCCGTTGTCGATGGCTTTAAGCCCGGTCAACGTAAAGT 241305 Query 218616 CCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGG 218675 ||| | || |||||||| || ||| | || || ||||| | | || | || Sbjct 241306 CCTTTACTCCTGCTTCAAGCGCAATCTGAAGAAGGATATGAAGGTTGTGGAATTGGCAGG 241365 Query 218676 TTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGT 218735 |||||| |||| | | ||| |||||| |||||||| || ||| | ||||| Sbjct 241366 TTATGTCTCCGGACTCACTGCCTACCAGCACGGTGAAACCTCGCTTCAGCAGACAATTGT 241425 Query 218736 AGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCA 218795 || |||| ||| | ||| || |||||||| |||| || |||| ||| | Sbjct 241426 TGGTCTGGCGCAGACTTTTGTTGGGTCAAACAACATCAACTGTCTCGAGCCCAGTGGTAA 241485 Query 218796 GTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGC 218831 |||||| |||||| ||||| | ||| |||| Sbjct 241486 CTTTGGTAGTCGTCTTCAAGGTGGTAGCGATTGTGC 241521 >seq4 Length=2013987 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760 ||||||| || || |||||||| || || || ||| ||||| ||||| | | || Sbjct 273673 CTCACTCCCGTATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTTGTCCTTGCTGCTT 273614 Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820 ||||| ||||| | |||||||| || || || ||||||||||| ||||| |||||||| Sbjct 273613 GCTCT-TGGCAGCGTCCTCACGTCATTGTCCTTGACGAGCCTACTAACTACCTGGACCGT 273555 Query 280821 GAGAGCCTGGGCGCTCTG 280838 || ||| || |||||| Sbjct 273554 GACTCCCTTGGTGCTCTG 273537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833797431748