Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Penicillium_20sclerotiorum_20[genbank_20GCA_5F001750025.1_202016-09-
29] 228 sequences; 34,025,097 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq2 161 2e-34
seq5 104 5e-17
seq3 91.5 3e-13
seq4 89.7 1e-12
>seq2
Length=2385438
Score = 161 bits (178), Expect = 2e-34
Identities = 281/405 (69%), Gaps = 14/405 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | |||||| |||||||||| ||||||||||||||||||||| |||
Sbjct 270738 TCGAAGAAGTTGGTCTTGCCAGCCAGAGAGATAGACTCCATGAAGTCGAAGGGGTTGGTG 270679
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
|||||| | | ||| | | ||| || || || | || ||||| || || ||||| |
Sbjct 270678 GCATTGAAGTACTTCTGGTTGCCGAGAGCGACCAGGAGACGGTCAGCGACGAACTCGATG 270619
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
|| || | ||| || | | ||||||||||| || | ||| |||| || ||| | |
Sbjct 270618 TATTGGCACATGAGCTTGGCGTTCATGCCAAGCAGAGCACAGGGAAGGGCATCAGTCAGG 270559
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT--TGCCTTCA-----CCTGTGCCAG 251795
|| |||| ||| || | || | |||| ||||| || | ||| | || | ||
Sbjct 270558 AACTCCTGCTCGATGCCGACAG---CCTCGACAATGATGTCCTCAACAACCTTGGGGGAG 270502
Query 251796 AGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTC 251855
| | | ||||| || | ||| | || || | | || | ||| ||||||||
Sbjct 270501 GGGC-GGTTGTT---GAGGTGGGAGAAAAGCAGACAGGCGAAGTCGGTGTGGAGACCCTC 270446
Query 251856 GTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAG 251915
|| ||| ||| | ||||||||| | | ||| |||||||||| ||||| ||| | ||
Sbjct 270445 ATCACGAGAGATAAGCTCGTTGGAGAAAGTCAGACCAGGCATCAGACCACGCTTCTTCAG 270386
Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960
||||||||| | | |||||| |||||||| | | |||||| ||
Sbjct 270385 CCAGAAGATAGAGGCAAAGGAGCCAGAGAAGAAGATACCCTCAAC 270341
>seq5
Length=1529696
Score = 104 bits (114), Expect = 5e-17
Identities = 163/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Plus
Query 279692 GCCAGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCT 279751
||| || || ||||| || ||||||||||||||||||||||| || |||||||||| ||
Sbjct 519426 GCCTGTTGGATCTCTATCCGGTGGTTGGAAGATGAAGCTGGCTCTTGCTCGCGCCATGCT 519485
Query 279752 ACTGCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGT 279811
| | ||||||||||| || || || || || || |||||| |||| | |||||
Sbjct 519486 GCAGAAGGCCGATGTCCTCCTCCTGGACGAACCTACTAACCACTTGGATGTTGCAAACGT 519545
Query 279812 AGCCTGGCT---AGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTC 279868
||||| || | ||||| | | | | | || | | ||||| ||
Sbjct 519546 GAAGTGGCTGCAAGAG---TACCTCAAGAAGCACACACAAATTACCAGTTTGATTGTTTC 519602
Query 279869 TCACGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAG 279920
|||||||||||| ||||| |||| || ||| ||| |||| |||||| |||
Sbjct 519603 TCACGACTCTGGTTTCCTTGATGAGGTCTGCACTGACATCTATCACTACGAG 519654
>seq3
Length=2224433
Score = 91.5 bits (100), Expect = 3e-13
Identities = 258/396 (65%), Gaps = 8/396 (2%)
Strand=Plus/Plus
Query 218440 GATGAGCGCAAGACCTGGCTGCTCGACTTCCAGCCCGGAAACCAGTTGGACCAGTCGAAG 218499
|||||||| ||| ||||| | | | ||| ||||||| | | | | || || || | |
Sbjct 241130 GATGAGCGAAAGGAATGGCTTCGCCAATTCAAGCCCGGTACCTATCTTGATCACTCCATG 241189
Query 218500 ACCAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTAT--- 218556
||| || | | | || |||||| ||||||||||||| || || | ||||
Sbjct 241190 GACAAGATTTCGTACACCGATTTCATCAACAAGGAGCTCATCCTCTT----CAGTATGGC 241245
Query 218557 -GATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGAT 218615
||| ||||||| |||||| ||| || |||||| | ||||| || ||||| |
Sbjct 241246 CGATAACCAGCGTTCCATTCCCTCCGTTGTCGATGGCTTTAAGCCCGGTCAACGTAAAGT 241305
Query 218616 CCTCTTTGCCGCATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGG 218675
||| | || |||||||| || ||| | || || ||||| | | || | ||
Sbjct 241306 CCTTTACTCCTGCTTCAAGCGCAATCTGAAGAAGGATATGAAGGTTGTGGAATTGGCAGG 241365
Query 218676 TTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGT 218735
|||||| |||| | | ||| |||||| |||||||| || ||| | |||||
Sbjct 241366 TTATGTCTCCGGACTCACTGCCTACCAGCACGGTGAAACCTCGCTTCAGCAGACAATTGT 241425
Query 218736 AGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCA 218795
|| |||| ||| | ||| || |||||||| |||| || |||| ||| |
Sbjct 241426 TGGTCTGGCGCAGACTTTTGTTGGGTCAAACAACATCAACTGTCTCGAGCCCAGTGGTAA 241485
Query 218796 GTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGC 218831
|||||| |||||| ||||| | ||| ||||
Sbjct 241486 CTTTGGTAGTCGTCTTCAAGGTGGTAGCGATTGTGC 241521
>seq4
Length=2013987
Score = 89.7 bits (98), Expect = 1e-12
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 280702 CTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGCA- 280760
||||||| || || |||||||| || || || ||| ||||| ||||| | | ||
Sbjct 273673 CTCACTCCCGTATGCGCGGTCTGTCCGGTGGTCAGCGTGTCAAGGTTGTCCTTGCTGCTT 273614
Query 280761 GCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGC 280820
||||| ||||| | |||||||| || || || ||||||||||| ||||| ||||||||
Sbjct 273613 GCTCT-TGGCAGCGTCCTCACGTCATTGTCCTTGACGAGCCTACTAACTACCTGGACCGT 273555
Query 280821 GAGAGCCTGGGCGCTCTG 280838
|| ||| || ||||||
Sbjct 273554 GACTCCCTTGGTGCTCTG 273537
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027833797431748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |