Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Penicillium_20sclerotiorum_20[genbank_20GCA_5F001750025.1_202016-09- 29] 228 sequences; 34,025,097 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq1 140 8e-28 seq10 102 2e-16 seq52 93.3 1e-13 >seq1 Length=4666273 Score = 140 bits (154), Expect = 8e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | || ||||| ||||| || |||| ||||| |||| | ||| Sbjct 4323395 ACGCAGACGCAGGACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGT 4323336 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| || || ||||| Sbjct 4323335 GCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACC 4323276 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||||||| ||||||||||| || | || || || | Sbjct 4323275 CTCCTTGTCCTGGATCTTGGACTTCACATTGTCGATGGTGTCGGAAGACTCAACCTCAAG 4323216 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||||||| || | || || | ||| | ||||| Sbjct 4323215 AGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 4323174 Score = 136 bits (150), Expect = 9e-27 Identities = 144/190 (76%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | |||||||||||| || || |||| ||||| || | | || | ||||| Sbjct 4323157 AGGACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCC 4323098 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 4323097 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 4323038 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| |||| || || || || ||||| ||| Sbjct 4323037 TGGATCTTAGACTTGACATTGTCGATGGTGTCAGAGGACTCAACCTCCAAGGTGATGGTC 4322978 Query 225682 TTGCCCGTCA 225691 ||||| |||| Sbjct 4322977 TTGCCAGTCA 4322968 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| || || |||| |||||||| | | ||| | ||||| Sbjct 4323968 AGGACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCCGAGAGAGTGCGACCATCC 4323909 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||| ||||||||||| || || || ||||| || || ||||| |||||||| Sbjct 4323908 TCCAACTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCCGGAGGGATACCCTCCTTGTCC 4323849 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || |||||||| || || | || || || || ||||| ||| Sbjct 4323848 TGAATCTTGCTCTTGACGTTGTCGATGGTATCGGAAGACTCGACTTCCAAAGTGATAGTC 4323789 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | ||| | |||||| Sbjct 4323788 TTGCCAGTAAGAGTCTTGACGAAGATTTGCAT 4323757 Score = 125 bits (138), Expect = 2e-23 Identities = 161/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | |||||| | || ||||| ||||| || |||| ||||| |||| | ||| Sbjct 4323623 ACGCAGACGCAGGACCAAATGAAGAGTAGATTCCTTCTGGATGTTGTAGTCGGAGAGAGT 4323564 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| ||||||||||| || || || ||||| || || ||||| Sbjct 4323563 GCGACCGTCCTCAAGCTGCTTACCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATACC 4323504 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||||||||||| ||| || ||||| || || |||| ||||| || | Sbjct 4323503 CTCCTTGTCTTGGATCTTGCTCTTGACGTTGTCGATAGTATCAGAGGACTCCACCTCCAG 4323444 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | || || | ||| | ||||| Sbjct 4323443 GGTAATAGTCTTTCCAGTGAGGGTCTTGACGAAGATCTGCAT 4323402 Score = 100 bits (110), Expect = 7e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| ||||| |||| ||||| || | | ||| | ||||| Sbjct 3064411 AGGACGAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAAAGAGTGCGGCCATCC 3064470 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || || ||||| || || ||||| ||||||||| Sbjct 3064471 TCGAGCTGCTTACCAGCGAAGATCAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCT 3064530 >seq10 Length=1051362 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| || ||| | ||||| || |||||||| || |||||||| Sbjct 358833 TTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATC 358774 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || ||||| || || || ||||| || |||||||| |||||||| ||| || ||| Sbjct 358773 AGACGTTGCTGATCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGTCTTGACGTTGTCG 358714 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAA 225704 |||||||| | || ||||| | || || ||||| ||||||| || || | ||| Sbjct 358713 ATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGACGAA 358655 >seq52 Length=29153 Score = 93.3 bits (102), Expect = 1e-13 Identities = 188/275 (68%), Gaps = 7/275 (3%) Strand=Plus/Plus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATT 7500 || ||||| ||||| ||| ||||| || | ||||| || |||||| | | Sbjct 11195 ACATTATACTTAATGTTTTCATTATTTTCAGGATTAATAGGAACAGCATTTTCAGTATTA 11254 Query 7501 ATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATAT-TGAGTGGTAATAGCCAACTTT 7558 ||||| ||||||||| | | ||| || ||| | || | || |||| ||| | | Sbjct 11255 ATAAGATTAGAATTATCAGGTCCAGGAGTACAATACATATCAGA--TAAT---CAATTAT 11309 Query 7559 ACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTA 7618 | || ||||||||| || || || | | ||||| |||||| | |||||||| | Sbjct 11310 ATAATAGTATTATTACAGCACACGCTATATTAATGATATTCTTTATGGTTATGCCTGCAT 11369 Query 7619 TGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTT 7678 | ||||| ||||| || |||| || | || ||| | | || | |||||||||||| | Sbjct 11370 TAATAGGAGGTTTTGGTAATTTCTTATTACCATTATTAGTAGGAGGTCCTGATATGGCAT 11429 Query 7679 TTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 | || || | || ||||||||||| |||||| || Sbjct 11430 TCCCTAGATTAAATAATATAAGTTTCTGATTATTA 11464 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||| || ||||||||||||||||| | | |||||||| ||||| || | Sbjct 11875 TTCAGGATGACCGAAGAATCAGAATAAATGTTGGAATAATATAGGATCACCTCCTCCAGC 11816 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | || || || ||||||||| |||||||| ||||| Sbjct 11815 TACTTCGAAGAATGAAGTATTAAAGTTTCTATCTGTTAA 11777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192527716318232